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Expand MCQUANT with glcm features #49

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Expand MCQUANT with glcm features #49

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Commits on Aug 5, 2024

  1. Included glcm functions into the script and adjusted parser help info… 

    …rmation accordingly
    @LukasHats
    LukasHats committed Aug 5, 2024
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  2. added a second script which does not calculates gclm multiple time pe… 

    …r cell label
    @LukasHats
    LukasHats committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. adjust the image parameter in glcm function

    @LukasHats
    LukasHats committed Aug 6, 2024
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  2. Rename SingleCellDataExtraction.py to SingleCellDataExtraction_expand… 

    …ed.py

Rename
    @ArozHada
    ArozHada authored Aug 6, 2024
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  3. adjust glcm function image names

    @LukasHats
    LukasHats committed Aug 6, 2024
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  4. Merge branch 'expand_quant_L' of https://github.com/SchapiroLabor/qua… 

    …ntification into expand_quant_L
    @LukasHats
    LukasHats committed Aug 6, 2024
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  5. Update SingleCellDataExtraction_v2.py

    @ArozHada
    ArozHada authored Aug 6, 2024
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  6. Adjusted Readme, deleted second python file. Adjsuted the new expande… 

    …d MCQUANT main file to handle additional glcm features, resizing of the loaded image to uint8 for glcm calculation, adjusted extra property handling of the regionprops_table function. Version importing has to be adjusted next
    @LukasHats
    LukasHats committed Aug 6, 2024
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  7. corrected error in glcm function, forgot to use uint8 image as input

    @LukasHats
    LukasHats committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. Added CLI option to set angle and distance for GLCM calculation, adju… 

    …sted readme accordinglt
    @LukasHats
    LukasHats committed Aug 7, 2024
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  2. adjusted parameters in remaining functions for glcm angle and glcm_di… 

    …stance
    @LukasHats
    LukasHats committed Aug 7, 2024
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  3. Update README.md

    @ArozHada
    ArozHada authored Aug 7, 2024
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  4. Update README.md

    @ArozHada
    ArozHada authored Aug 7, 2024
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  5. changed CLI inputs to be correctly passed down from funciton to function

    @LukasHats
    LukasHats committed Aug 7, 2024
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  6. Merge branch 'expand_quant_L' of https://github.com/SchapiroLabor/qua… 

    …ntification into expand_quant_L
    @LukasHats
    LukasHats committed Aug 7, 2024
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  7. Merge pull request #1 from SchapiroLabor/expand_quant_L 

    Expansion of MCQUANT with glcm features
    @LukasHats
    LukasHats authored Aug 7, 2024
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  8. Adjusted readme and ParserInput to include information on angles and … 

    …distance parameters
    @LukasHats
    LukasHats committed Aug 7, 2024
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