Changed configure files for installing db_rest_server

Dockerfile

@@ -9,4 +9,5 @@ RUN /app/build.sh
 
 #run
 WORKDIR /app
-CMD /app/run.sh
+ENTRYPOINT ["/app/run.sh"]
+CMD ["crime","/data","/data/config.json","/data/crimes50k.db"]

Makefile.am

@@ -59,7 +59,7 @@ endif
 
 bin_PROGRAMS=nanocube
 nanocube_SOURCES=src/platform_dependent/nix_app.c
-nanocube_CFLAGS=-pthread
+nanocube_CFLAGS=-pthread -O2
 nanocube_LDADD=-lm
 if WITH_POLYCOVER
 nanocube_CFLAGS+=-DPOLYCOVER

Makefile.in

@@ -1,7 +1,7 @@
-# Makefile.in generated by automake 1.16.1 from Makefile.am.
+# Makefile.in generated by automake 1.16.2 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2018 Free Software Foundation, Inc.
+# Copyright (C) 1994-2020 Free Software Foundation, Inc.
 
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -286,8 +286,8 @@ am__recursive_targets = \
   $(am__extra_recursive_targets)
 AM_RECURSIVE_TARGETS = $(am__recursive_targets:-recursive=) TAGS CTAGS \
 	cscope distdir distdir-am dist dist-all distcheck
-am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) \
-	$(LISP)config.h.in
+am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP) \
+	config.h.in
 # Read a list of newline-separated strings from the standard input,
 # and print each of them once, without duplicates.  Input order is
 # *not* preserved.
@@ -502,7 +502,7 @@ ACLOCAL_AMFLAGS = -I m4
 @WITH_POLYCOVER_TRUE@	src/polycover/glu/tessellate.c
 
 nanocube_SOURCES = src/platform_dependent/nix_app.c
-nanocube_CFLAGS = -pthread $(am__append_1) $(am__append_3) \
+nanocube_CFLAGS = -pthread -O2 $(am__append_1) $(am__append_3) \
 	$(am__append_4)
 nanocube_LDADD = -lm $(am__append_2)
 SUBDIRS = web
@@ -985,6 +985,10 @@ dist-xz: distdir
 	tardir=$(distdir) && $(am__tar) | XZ_OPT=$${XZ_OPT--e} xz -c >$(distdir).tar.xz
 	$(am__post_remove_distdir)
 
+dist-zstd: distdir
+	tardir=$(distdir) && $(am__tar) | zstd -c $${ZSTD_CLEVEL-$${ZSTD_OPT--19}} >$(distdir).tar.zst
+	$(am__post_remove_distdir)
+
 dist-tarZ: distdir
 	@echo WARNING: "Support for distribution archives compressed with" \
 		       "legacy program 'compress' is deprecated." >&2
@@ -1027,6 +1031,8 @@ distcheck: dist
 	  eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).shar.gz | unshar ;;\
 	*.zip*) \
 	  unzip $(distdir).zip ;;\
+	*.tar.zst*) \
+	  zstd -dc $(distdir).tar.zst | $(am__untar) ;;\
 	esac
 	chmod -R a-w $(distdir)
 	chmod u+w $(distdir)
@@ -1261,19 +1267,19 @@ uninstall-am: uninstall-binPROGRAMS uninstall-libLIBRARIES
 	clean-binPROGRAMS clean-cscope clean-generic \
 	clean-libLIBRARIES cscope cscopelist-am ctags ctags-am dist \
 	dist-all dist-bzip2 dist-gzip dist-lzip dist-shar dist-tarZ \
-	dist-xz dist-zip distcheck distclean distclean-compile \
-	distclean-generic distclean-hdr distclean-tags distcleancheck \
-	distdir distuninstallcheck dvi dvi-am html html-am info \
-	info-am install install-am install-binPROGRAMS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-libLIBRARIES install-man install-pdf \
-	install-pdf-am install-ps install-ps-am install-strip \
-	installcheck installcheck-am installdirs installdirs-am \
-	maintainer-clean maintainer-clean-generic mostlyclean \
-	mostlyclean-compile mostlyclean-generic pdf pdf-am ps ps-am \
-	tags tags-am uninstall uninstall-am uninstall-binPROGRAMS \
-	uninstall-libLIBRARIES
+	dist-xz dist-zip dist-zstd distcheck distclean \
+	distclean-compile distclean-generic distclean-hdr \
+	distclean-tags distcleancheck distdir distuninstallcheck dvi \
+	dvi-am html html-am info info-am install install-am \
+	install-binPROGRAMS install-data install-data-am install-dvi \
+	install-dvi-am install-exec install-exec-am install-html \
+	install-html-am install-info install-info-am \
+	install-libLIBRARIES install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs installdirs-am maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic pdf pdf-am ps ps-am tags tags-am uninstall \
+	uninstall-am uninstall-binPROGRAMS uninstall-libLIBRARIES
 
 .PRECIOUS: Makefile
 

aclocal.m4

@@ -1,6 +1,6 @@
-# generated automatically by aclocal 1.16.1 -*- Autoconf -*-
+# generated automatically by aclocal 1.16.2 -*- Autoconf -*-
 
-# Copyright (C) 1996-2018 Free Software Foundation, Inc.
+# Copyright (C) 1996-2020 Free Software Foundation, Inc.
 
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -20,7 +20,7 @@ You have another version of autoconf.  It may work, but is not guaranteed to.
 If you have problems, you may need to regenerate the build system entirely.
 To do so, use the procedure documented by the package, typically 'autoreconf'.])])
 
-# Copyright (C) 2002-2018 Free Software Foundation, Inc.
+# Copyright (C) 2002-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -35,7 +35,7 @@ AC_DEFUN([AM_AUTOMAKE_VERSION],
 [am__api_version='1.16'
 dnl Some users find AM_AUTOMAKE_VERSION and mistake it for a way to
 dnl require some minimum version.  Point them to the right macro.
-m4_if([$1], [1.16.1], [],
+m4_if([$1], [1.16.2], [],
       [AC_FATAL([Do not call $0, use AM_INIT_AUTOMAKE([$1]).])])dnl
 ])
 
@@ -51,12 +51,12 @@ m4_define([_AM_AUTOCONF_VERSION], [])
 # Call AM_AUTOMAKE_VERSION and AM_AUTOMAKE_VERSION so they can be traced.
 # This function is AC_REQUIREd by AM_INIT_AUTOMAKE.
 AC_DEFUN([AM_SET_CURRENT_AUTOMAKE_VERSION],
-[AM_AUTOMAKE_VERSION([1.16.1])dnl
+[AM_AUTOMAKE_VERSION([1.16.2])dnl
 m4_ifndef([AC_AUTOCONF_VERSION],
   [m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl
 _AM_AUTOCONF_VERSION(m4_defn([AC_AUTOCONF_VERSION]))])
 
-# Copyright (C) 2011-2018 Free Software Foundation, Inc.
+# Copyright (C) 2011-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -118,7 +118,7 @@ AC_SUBST([AR])dnl
 
 # AM_AUX_DIR_EXPAND                                         -*- Autoconf -*-
 
-# Copyright (C) 2001-2018 Free Software Foundation, Inc.
+# Copyright (C) 2001-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -170,7 +170,7 @@ am_aux_dir=`cd "$ac_aux_dir" && pwd`
 
 # AM_CONDITIONAL                                            -*- Autoconf -*-
 
-# Copyright (C) 1997-2018 Free Software Foundation, Inc.
+# Copyright (C) 1997-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -201,7 +201,7 @@ AC_CONFIG_COMMANDS_PRE(
 Usually this means the macro was only invoked conditionally.]])
 fi])])
 
-# Copyright (C) 1999-2018 Free Software Foundation, Inc.
+# Copyright (C) 1999-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -392,7 +392,7 @@ _AM_SUBST_NOTMAKE([am__nodep])dnl
 
 # Generate code to set up dependency tracking.              -*- Autoconf -*-
 
-# Copyright (C) 1999-2018 Free Software Foundation, Inc.
+# Copyright (C) 1999-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -431,7 +431,9 @@ AC_DEFUN([_AM_OUTPUT_DEPENDENCY_COMMANDS],
   done
   if test $am_rc -ne 0; then
     AC_MSG_FAILURE([Something went wrong bootstrapping makefile fragments
-    for automatic dependency tracking.  Try re-running configure with the
+    for automatic dependency tracking.  If GNU make was not used, consider
+    re-running the configure script with MAKE="gmake" (or whatever is
+    necessary).  You can also try re-running configure with the
     '--disable-dependency-tracking' option to at least be able to build
     the package (albeit without support for automatic dependency tracking).])
   fi
@@ -458,7 +460,7 @@ AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS],
 
 # Do all the work for Automake.                             -*- Autoconf -*-
 
-# Copyright (C) 1996-2018 Free Software Foundation, Inc.
+# Copyright (C) 1996-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -655,7 +657,7 @@ for _am_header in $config_headers :; do
 done
 echo "timestamp for $_am_arg" >`AS_DIRNAME(["$_am_arg"])`/stamp-h[]$_am_stamp_count])
 
-# Copyright (C) 2001-2018 Free Software Foundation, Inc.
+# Copyright (C) 2001-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -676,7 +678,7 @@ if test x"${install_sh+set}" != xset; then
 fi
 AC_SUBST([install_sh])])
 
-# Copyright (C) 2003-2018 Free Software Foundation, Inc.
+# Copyright (C) 2003-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -698,7 +700,7 @@ AC_SUBST([am__leading_dot])])
 # Add --enable-maintainer-mode option to configure.         -*- Autoconf -*-
 # From Jim Meyering
 
-# Copyright (C) 1996-2018 Free Software Foundation, Inc.
+# Copyright (C) 1996-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -733,7 +735,7 @@ AC_MSG_CHECKING([whether to enable maintainer-specific portions of Makefiles])
 
 # Check to see how 'make' treats includes.	            -*- Autoconf -*-
 
-# Copyright (C) 2001-2018 Free Software Foundation, Inc.
+# Copyright (C) 2001-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -776,7 +778,7 @@ AC_SUBST([am__quote])])
 
 # Fake the existence of programs that GNU maintainers use.  -*- Autoconf -*-
 
-# Copyright (C) 1997-2018 Free Software Foundation, Inc.
+# Copyright (C) 1997-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -815,7 +817,7 @@ fi
 
 # Helper functions for option handling.                     -*- Autoconf -*-
 
-# Copyright (C) 2001-2018 Free Software Foundation, Inc.
+# Copyright (C) 2001-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -844,7 +846,7 @@ AC_DEFUN([_AM_SET_OPTIONS],
 AC_DEFUN([_AM_IF_OPTION],
 [m4_ifset(_AM_MANGLE_OPTION([$1]), [$2], [$3])])
 
-# Copyright (C) 1999-2018 Free Software Foundation, Inc.
+# Copyright (C) 1999-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -891,7 +893,7 @@ AC_LANG_POP([C])])
 # For backward compatibility.
 AC_DEFUN_ONCE([AM_PROG_CC_C_O], [AC_REQUIRE([AC_PROG_CC])])
 
-# Copyright (C) 2001-2018 Free Software Foundation, Inc.
+# Copyright (C) 2001-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -910,7 +912,7 @@ AC_DEFUN([AM_RUN_LOG],
 
 # Check to make sure that the build environment is sane.    -*- Autoconf -*-
 
-# Copyright (C) 1996-2018 Free Software Foundation, Inc.
+# Copyright (C) 1996-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -991,7 +993,7 @@ AC_CONFIG_COMMANDS_PRE(
 rm -f conftest.file
 ])
 
-# Copyright (C) 2009-2018 Free Software Foundation, Inc.
+# Copyright (C) 2009-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -1051,7 +1053,7 @@ AC_SUBST([AM_BACKSLASH])dnl
 _AM_SUBST_NOTMAKE([AM_BACKSLASH])dnl
 ])
 
-# Copyright (C) 2001-2018 Free Software Foundation, Inc.
+# Copyright (C) 2001-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -1079,7 +1081,7 @@ fi
 INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s"
 AC_SUBST([INSTALL_STRIP_PROGRAM])])
 
-# Copyright (C) 2006-2018 Free Software Foundation, Inc.
+# Copyright (C) 2006-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -1098,7 +1100,7 @@ AC_DEFUN([AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE($@)])
 
 # Check how to create a tarball.                            -*- Autoconf -*-
 
-# Copyright (C) 2004-2018 Free Software Foundation, Inc.
+# Copyright (C) 2004-2020 Free Software Foundation, Inc.
 #
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,

configure

@@ -6742,7 +6742,9 @@ $as_echo X/"$am_mf" |
     { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
 $as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
 as_fn_error $? "Something went wrong bootstrapping makefile fragments
-    for automatic dependency tracking.  Try re-running configure with the
+    for automatic dependency tracking.  If GNU make was not used, consider
+    re-running the configure script with MAKE=\"gmake\" (or whatever is
+    necessary).  You can also try re-running configure with the
     '--disable-dependency-tracking' option to at least be able to build
     the package (albeit without support for automatic dependency tracking).
 See \`config.log' for more details" "$LINENO" 5; }

docker-app/build.sh

@@ -5,10 +5,6 @@ apt-get update
 apt-get install --no-install-recommends --no-install-suggests -y \
         build-essential git nginx ca-certificates
 
-#apt-get install --no-install-recommends --no-install-suggests -y \
-#        python3-pip python3 
-#pip3 install --no-cache-dir fastapi uvicorn pandas sqlalchemy
-
 #clone and build
 git clone https://github.com/laurolins/nanocube.git /nanocube-src 
 cd /nanocube-src 
@@ -27,8 +23,14 @@ mv /app/config.json /data
 cd /nanocube-src
 bash -c '/nanocube/bin/nanocube create <(gunzip -c ./data/crime50k.csv.gz) ./data/crime50k.map /data/crime50k.nanocube -header' 
 
+#sample database
+apt-get install --no-install-recommends --no-install-suggests -y \
+        python3-pip python3 
+pip3 install --no-cache-dir fastapi uvicorn pandas sqlalchemy
+python3 -c 'import pandas as pd;from sqlalchemy import create_engine; pd.read_csv("data/crime50k.csv.gz").to_sql("crimes",create_engine("sqlite:////data/crimes50k.db"))'
+
 #cleanup
-rm -rf /nanocube-src 
 apt-get remove --purge -y build-essential git python3-pip
 apt-get autoremove -y && apt-get clean
 rm -rf /var/lib/apt/lists/*
+rm -rf /nanocube-src 

docker-app/run.sh

@@ -1,14 +1,18 @@
 #!/bin/sh
 set -x
+export NAME=$1
+export NCDIR=$2
+export WEBCONFIG=$3
+export DBFILE=$4
 
 #link custom web config to /www
-ln -s /data/config.json  /www
+ln -s $WEBCONFIG  /www/config.json
 
 #start webserver
 nginx -c /app/nginx.conf
 
 #start db rest server
-#uvicorn /app/db_rest_server:app --port 54322
+uvicorn /nanocube/bin/db_rest_server:app --port 54322 &
 
 #start nanocubes server with all the nanocube files
-/nanocube/bin/nanocube serve 54321 nc=`ls -1 /data/*.nanocube|paste -sd ':'`
+/nanocube/bin/nanocube serve 54321 $NAME=`ls -1 $NCDIR/*.nanocube|paste -sd ':'`

web/Makefile.am

@@ -3,7 +3,8 @@ ACLOCAL_AMFLAGS=-I m4
 
 nanocube_webconfigdir=${prefix}
 nobase_dist_nanocube_webconfig_SCRIPTS=\
-bin/nanocube_webconfig
+bin/nanocube_webconfig \
+bin/db_rest_server.py
 
 nanocube_webdir=${prefix}/share/nanocube/web