GRETA Basis Pipeline Docker Workflow

This repository provides a compose.yaml file for pulling down the greta-pipeline docker image, and running the basis generation code.

To run, clone the repository

git clone https://github.com/JessicaRehak/greta-pipeline-docker.git

Edit config.greta.yaml to specify the steps you would like to run, edit any files in the static_inputs/ directory, and then run

docker compose up

All the pipeline output files will be in /output by default. If you'd like to map a different location, edit the source: field under volumes in compose.yaml.

Notes

• Do not change the internal docker image output directory /output in either the compose file or the configuration file. Otherwise the container may not run due to internal docker user-permissions.