derCountSupp

Supplementary material for the derfinder counting paper

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
additional-analyses		additional-analyses
gff		gff
hippo		hippo
snyder		snyder
timing		timing
venn		venn
.gitignore		.gitignore
.nojekyll		.nojekyll
LICENSE		LICENSE
README.md		README.md
check-analysis-time.R		check-analysis-time.R
index.Rmd		index.Rmd
index.bib		index.bib
index.html		index.html
optional1-sortSam.sh		optional1-sortSam.sh
optional2-HTSeq.sh		optional2-HTSeq.sh
optional3-summOv.R		optional3-summOv.R
optional3-summOv.sh		optional3-summOv.sh
run-all.sh		run-all.sh
step1-fullCoverage.R		step1-fullCoverage.R
step1-fullCoverage.sh		step1-fullCoverage.sh
step2-makeModels.R		step2-makeModels.R
step2-makeModels.sh		step2-makeModels.sh
step3-analyzeChr.R		step3-analyzeChr.R
step3-analyzeChr.sh		step3-analyzeChr.sh
step4-mergeResults.sh		step4-mergeResults.sh
step5-derfinderReport.sh		step5-derfinderReport.sh
step6-regionMatrix.sh		step6-regionMatrix.sh
step7-regMatVsDERs.Rmd		step7-regMatVsDERs.Rmd
step7-regMatVsDERs.sh		step7-regMatVsDERs.sh
step8-coverageToExon.R		step8-coverageToExon.R
step8-coverageToExon.sh		step8-coverageToExon.sh
step9-summaryInfo.R		step9-summaryInfo.R
step9-summaryInfo.Rmd		step9-summaryInfo.Rmd
step9-summaryInfo.sh		step9-summaryInfo.sh

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