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Pathway analysis
Xinsong Du edited this page Feb 10, 2021
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Pathway analysis was done with Mummichog (see process "l"), cutoff value for significant pathways can be set with parameter --c
Usage
- Setup your computer
- Installing
- Setup your projects with RUMP using local machine
- Setup your projects with RUMP using HiPerGator
- Setup your projects with RUMP using Amazon Web Service
- Executing time estimation
- Data processing parameters modification
Components
- Data collection/generation
- MODIS data quality control
- Data format conversion
- Data processing
- File format transformation
- Statistical analysis
- Unidentified metabolites search
- Pathway analysis
- Report generation
Developers