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Added travisCI SIMDe example for arm64 + fix to Makefile for SIMDe #604

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Added travisCI SIMDe example for arm64 + fix to Makefile for SIMDe #604

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5eb9103
Added travisCI example + fix to Makefile for SIMDe
mbrcic May 11, 2020
f2d4f4f
Makefile.simde trim tailing
mbrcic May 18, 2020
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4 changes: 4 additions & 0 deletions .travis.yml
View file
Original file line number Diff line number Diff line change
@@ -10,6 +10,10 @@ matrix:
language: c
compiler: gcc
script: make arm_neon=1 aarch64=1
- arch: arm64
language: c
compiler: gcc
script: make -f Makefile.simde arm_neon=1 aarch64=1
- language: python
python: "2.7"
before_install: pip install cython
13 changes: 9 additions & 4 deletions Makefile.simde
View file
Original file line number Diff line number Diff line change
@@ -6,6 +6,7 @@ OBJS= kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o chain
PROG= minimap2
PROG_EXTRA= sdust minimap2-lite
LIBS= -lm -lz -lpthread
SSE4=


ifneq ($(arm_neon),) # if arm_neon is defined
@@ -16,6 +17,10 @@ else #if aarch64 is defined
endif
endif

ifeq ($(sse2only),) #if sse2only is not defined
SSE4+=-D__SSE4_1__
endif

ifneq ($(asan),)
CFLAGS+=-fsanitize=address
LIBS+=-fsanitize=address
@@ -49,16 +54,16 @@ sdust:sdust.c kalloc.o kalloc.h kdq.h kvec.h kseq.h ketopt.h sdust.h
$(CC) -D_SDUST_MAIN $(CFLAGS) $< kalloc.o -o $@ -lz

ksw2_ll_simde.o:ksw2_ll_sse.c ksw2.h kalloc.h
$(CC) -c $(CFLAGS) -msse2 $(CPPFLAGS) $(INCLUDES) $< -o $@
$(CC) -c $(CFLAGS) -D__SSE2__ $(CPPFLAGS) $(INCLUDES) $< -o $@

ksw2_extz2_simde.o:ksw2_extz2_sse.c ksw2.h kalloc.h
$(CC) -c $(CFLAGS) -msse4.1 $(CPPFLAGS) $(INCLUDES) $< -o $@
$(CC) -c $(CFLAGS) -D__SSE2__ $(SSE4) $(CPPFLAGS) $(INCLUDES) $< -o $@

ksw2_extd2_simde.o:ksw2_extd2_sse.c ksw2.h kalloc.h
$(CC) -c $(CFLAGS) -msse4.1 $(CPPFLAGS) $(INCLUDES) $< -o $@
$(CC) -c $(CFLAGS) -D__SSE2__ $(SSE4) $(CPPFLAGS) $(INCLUDES) $< -o $@

ksw2_exts2_simde.o:ksw2_exts2_sse.c ksw2.h kalloc.h
$(CC) -c $(CFLAGS) -msse4.1 $(CPPFLAGS) $(INCLUDES) $< -o $@
$(CC) -c $(CFLAGS) -D__SSE2__ $(SSE4) $(CPPFLAGS) $(INCLUDES) $< -o $@

# other non-file targets