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analysis
analysis
 
 
figures/woidlinos
figures/woidlinos
 
 
mex
mex
 
 
parameterisationPlots
parameterisationPlots
 
 
results/woidlinos
results/woidlinos
 
 
sampling
sampling
 
 
tests
tests
 
 
visualisation
visualisation
 
 
.gitattributes
.gitattributes
 
 
.gitignore
.gitignore
 
 
InterX.m
InterX.m
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
adaptTimeStep.m
adaptTimeStep.m
 
 
alignWithBoundary2D.m
alignWithBoundary2D.m
 
 
alignWithBoundaryCircular.m
alignWithBoundaryCircular.m
 
 
applyForces.m
applyForces.m
 
 
calculateAlignmentForce.m
calculateAlignmentForce.m
 
 
calculateForces.m
calculateForces.m
 
 
calculateHaptotaxisWeightedAdditive.m
calculateHaptotaxisWeightedAdditive.m
 
 
checkIntersects.m
checkIntersects.m
 
 
checkWoidBoundaryConditions.m
checkWoidBoundaryConditions.m
 
 
computeWoidDistancesWithBCs.m
computeWoidDistancesWithBCs.m
 
 
consumeFood.m
consumeFood.m
 
 
correctHeading.m
correctHeading.m
 
 
countNbrsByNode.m
countNbrsByNode.m
 
 
countNbrsByNodeWeighted.m
countNbrsByNodeWeighted.m
 
 
countNbrsByObject.m
countNbrsByObject.m
 
 
countNodesContacted.m
countNodesContacted.m
 
 
extendSimulation.m
extendSimulation.m
 
 
findWoidNeighbors.m
findWoidNeighbors.m
 
 
generateReversals.m
generateReversals.m
 
 
initialiseWoids.m
initialiseWoids.m
 
 
reflectDirection2D.m
reflectDirection2D.m
 
 
reflectDirectionCircular.m
reflectDirectionCircular.m
 
 
rerunWoidlinoParamSamplesWithSweeping.m
rerunWoidlinoParamSamplesWithSweeping.m
 
 
resolveContacts.m
resolveContacts.m
 
 
resolveContactsLoop.m
resolveContactsLoop.m
 
 
runWoidlinoParamSamplesPosteriorMean.m
runWoidlinoParamSamplesPosteriorMean.m
 
 
runWoidlinoParamSamplesPosteriorMeanHighNoise.m
runWoidlinoParamSamplesPosteriorMeanHighNoise.m
 
 
runWoidlinoParamSamplesPosteriorMeanLowNoise.m
runWoidlinoParamSamplesPosteriorMeanLowNoise.m
 
 
runWoidlinoParamSamplesPosteriorMeanN2.m
runWoidlinoParamSamplesPosteriorMeanN2.m
 
 
runWoidlinoParamSamplesPosteriorMeanNoRev.m
runWoidlinoParamSamplesPosteriorMeanNoRev.m
 
 
runWoidlinoParamSamplesPosteriorMeanNoSwitch.m
runWoidlinoParamSamplesPosteriorMeanNoSwitch.m
 
 
runWoidlinoParamSamplesPosteriorMeanNoTaxis.m
runWoidlinoParamSamplesPosteriorMeanNoTaxis.m
 
 
runWoidlinoParamSamplesPosteriorMeanShorterAgents.m
runWoidlinoParamSamplesPosteriorMeanShorterAgents.m
 
 
runWoidlinoParamSamplesPosteriorMeanShorterAgentsLengthAdjusted.m
runWoidlinoParamSamplesPosteriorMeanShorterAgentsLengthAdjusted.m
 
 
runWoidlinoParamSamplesPosteriorMeanVolEx.m
runWoidlinoParamSamplesPosteriorMeanVolEx.m
 
 
runWoidlinoParamSamplesPosteriorMeanWithSweeping.m
runWoidlinoParamSamplesPosteriorMeanWithSweeping.m
 
 
runWoidlinoParamSamplesPosteriorMeanWithUndulations.m
runWoidlinoParamSamplesPosteriorMeanWithUndulations.m
 
 
runWoidlinoPhasePortraitM18_clusterStability_revDensity.m
runWoidlinoPhasePortraitM18_clusterStability_revDensity.m
 
 
runWoidlinoPhasePortraitM18_clusterStability_revDensity_N2.m
runWoidlinoPhasePortraitM18_clusterStability_revDensity_N2.m
 
 
runWoidlinoPhasePortraitM18_pairStability_revDensity.m
runWoidlinoPhasePortraitM18_pairStability_revDensity.m
 
 
runWoidlinoPhasePortraitM18_pairStability_revDensity_N2.m
runWoidlinoPhasePortraitM18_pairStability_revDensity_N2.m
 
 
runWoidlinoPhasePortraitM18revDensity.m
runWoidlinoPhasePortraitM18revDensity.m
 
 
runWoids.m
runWoids.m
 
 
saveResults.m
saveResults.m
 
 
slowWorms.m
slowWorms.m
 
 
updateDwellingState.m
updateDwellingState.m
 
 
updateRoamingState.m
updateRoamingState.m
 
 
updateWoidOscillators.m
updateWoidOscillators.m
 
 

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sworm-model

agent based model of basic worm motility, interaction, and feeding

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