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Include DISEASE_PATH and fix conda env calling.
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loucerac authored Nov 5, 2022
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Expand Up @@ -51,12 +51,13 @@ where:
* `in_disease`: boolean if a given circuit is part of the disease

```
conda run -p ./.venv drexml run --n-gpus 0 --n-cpus 10 disease.env
conda run -n drexml drexml run --n-gpus 0 --n-cpus 10 $DISEASE_PATH
```

where:
* `--n-gpus` indicates the number of gpu devices to use in parallel (-1 -> all) (0 -> None)
* `--n-cpus` indicates the number of cpu devices to use in parallel (-1 -> all) 8
* `DISEASE_PATH` indicates the path to the disease env file (e.g. `/path/to/disease/folder/disease.env`)

Use the `--debug` option for testing that everything works using a few iterations.

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