Merge pull request #19 from macs3-project/macs3/3.0.2 #50
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: [push, pull_request] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:devel | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Install system dependencies | |
| run: | | |
| wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh && \ | |
| /bin/bash ~/miniconda.sh -b -p /opt/conda && \ | |
| rm ~/miniconda.sh && \ | |
| ln -s /opt/conda/bin/conda /usr/local/bin/ | |
| - name: Fix blas bug | |
| run: | | |
| ARCH=$(uname -m) | |
| update-alternatives --set "libblas.so.3-${ARCH}-linux-gnu" "/usr/lib/${ARCH}-linux-gnu/blas/libblas.so.3" | |
| update-alternatives --set "liblapack.so.3-${ARCH}-linux-gnu" "/usr/lib/${ARCH}-linux-gnu/lapack/liblapack.so.3" | |
| - name: Install dependencies | |
| run: | | |
| BiocManager::install("AnVIL") | |
| BiocManager::install(c("remotes", "rcmdcheck", "basilisk", "reticulate", "S4Vectors", "ExperimentHub", "AnnotationHub")) | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| shell: Rscript {0} |