tweak examples in notebook

malariagen · Jun 22, 2023 · 3cf92c1 · 3cf92c1
1 parent afad321
commit 3cf92c1
Showing 1 changed file with 24 additions and 7 deletions.
diff --git a/notebooks/plot_xpehh_gwss.ipynb b/notebooks/plot_xpehh_gwss.ipynb
@@ -37,7 +37,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "ag3.plot_xpehh_gwss_track(\n",
+    "ag3.plot_xpehh_gwss(\n",
     "    contig=\"X\",\n",
     "    window_size=1_000,\n",
     "    analysis=\"gamb_colu\",\n",
@@ -75,7 +75,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "ag3.plot_xpehh_gwss_track(\n",
+    "ag3.plot_xpehh_gwss(\n",
     "    contig=\"X\",\n",
     "    window_size=100,\n",
     "    analysis=\"gamb_colu\",\n",
@@ -85,14 +85,31 @@
     ")"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "181227f6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "ag3.plot_xpehh_gwss(\n",
+    "    contig=\"2RL\",\n",
+    "    window_size=100,\n",
+    "    analysis=\"gamb_colu\",\n",
+    "    cohort1_query=\"cohort_admin2_year == 'ML-2_Kati_colu_2014'\",\n",
+    "    cohort2_query=\"country == 'Mayotte'\",\n",
+    "    max_cohort_size=10,\n",
+    ")"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
    "id": "89cf50ac",
    "metadata": {},
    "outputs": [],
    "source": [
-    "ag3.plot_xpehh_gwss_track(\n",
+    "ag3.plot_xpehh_gwss(\n",
     "    contig=\"X\",\n",
     "    window_size=1_000,\n",
     "    analysis=\"gamb_colu\",\n",
@@ -120,7 +137,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "af1.plot_xpehh_gwss_track(\n",
+    "af1.plot_xpehh_gwss(\n",
     "    contig=\"X\",\n",
     "    window_size=2_000,\n",
     "    cohort1_query=\"cohort_admin1_year == 'MZ-L_fune_2018'\",\n",
@@ -136,8 +153,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "af1.plot_xpehh_gwss_track(\n",
-    "    contig=\"X\",\n",
+    "af1.plot_xpehh_gwss(\n",
+    "    contig=\"2RL\",\n",
     "    window_size=200,\n",
     "    cohort1_query=\"cohort_admin1_year == 'MZ-L_fune_2018'\",\n",
     "    cohort2_query=\"cohort_admin1_year == 'GA-2_fune_2017'\",\n",
@@ -170,7 +187,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.11"
+   "version": "3.10.6"
   }
  },
  "nbformat": 4,