updated usage

malonge · Dec 2, 2020 · 290f96d · 290f96d
1 parent 4831c61
commit 290f96d
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/ragtag.py b/ragtag.py
@@ -44,12 +44,12 @@ def main():
 usage: ragtag.py <command> [options]
     
     assembly improvement:
-      correct         correct misassemblies 
+      correct         misassembly correction 
       scaffold        synteny scaffolding
       
     file utilities:
       agp2fasta       build a FASTA file from an AGP file
-      agpcheck       check for valid AGP file format
+      agpcheck        check for valid AGP file format
       updategff       update gff intervals
       
     

diff --git a/ragtag_agpcheck.py b/ragtag_agpcheck.py
@@ -25,15 +25,14 @@
 """
 
 import os
-import sys
 import argparse
 
 from ragtag_utilities.utilities import log
 from ragtag_utilities.AGPFile import AGPFile
 
 
 def main():
-    parser = argparse.ArgumentParser(description="Check AGP v2.1 files for validity.", usage="reconcile.py <asm1.agp> [<asm2.agp> ... <asmN.agp>]")
+    parser = argparse.ArgumentParser(description="Check AGP v2.1 files for validity.", usage="ragtag.py agpcheck <asm1.agp> [<asm2.agp> ... <asmN.agp>]")
     parser.add_argument("agp", metavar="<asm1.agp> [<asm2.agp> ... <asmN.agp>]", nargs='+', default=[], type=str, help="AGP v2.1 files")
 
     DISCLAIMER = """