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Memorial Sloan Kettering
- New York
- https://marcjwilliams1.github.io/
- @marcjwills_
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normal_brca_scdna Public
Code to reproduce figures from Williams, Oliphant and Au et al. "Luminal breast epithelial cells of BRCA1 or BRCA2 mutation carriers and non-carriers harbor common breast cancer copy number alterat…
HTML UpdatedNov 20, 2024 -
svtyper Public
Forked from brentp/svtyperBayesian genotyper for structural variants
Python MIT License UpdatedOct 11, 2024 -
ApproxBayes.jl Public
Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia
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marcjwilliams1.github.io Public
Forked from academicpages/academicpages.github.ioGithub Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
JavaScript MIT License UpdatedOct 7, 2021 -
Alleloscope Public
Forked from seasoncloud/AlleloscopeAlleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows …
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neutralitytestr Public
Testing a neutral evolution model on cancer sequencing data
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SubClonalSelection.jl Public
Inferring selection in cancer sequencing data using ABC and population based simulations
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dnds-clonesize Public
Snakemake pipeline to produce figures for "Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios"
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bayes-bior-docker Public
Docker container for collection of R packages for bioinformatics and bayesian inference
Dockerfile UpdatedApr 30, 2020 -
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DPClustering.jl Public
Dirichilet process clustering for cancer sequencing data
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r_rmd_tidy_bio Public
Singularity image for using r markdown with tidyverse and some bioconductor packages for plotting
UpdatedDec 17, 2019 -
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dndscv Public
Forked from im3sanger/dndscvdN/dS methods to quantify selection in cancer and somatic evolution
R UpdatedSep 16, 2019 -
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Palimpsest Public
Forked from FunGeST/PalimpsestAn R package for studying mutational and structural variant signatures along clonal evolution in cancer.
R UpdatedJul 12, 2019