Scripts used for HIV simulation work.
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Report describing aims, methods and initial progress is in 'Project_Report' folder. Report includes various simple examples for illustration, and the original figures used are in a subfolder.
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Key data and main, linked, set of scripts to run simulations and inferences in 'Main_Collection' folder. Original transmission network csv too large to upload, so only pickled data in Individual Class format is provided here.
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Old, work-in-progress scripts (different methods, or stages to develop different aspects/learning) and related files in 'Older_progress' folder.