.gitlab-ci.yml

variables:
  DOCKER_DRIVER: overlay2
  DOCKER_VERSION: 18.09.7
  RENDER_HOST: myrender
  RENDER_PORT: 8080
  RENDER_BRANCH: ibeam_msem


prepare_test_data:
  stage: build
  image: 'python:3.7-bullseye'
  cache:
    paths:
      - tests/test_files
    untracked: true
    policy: push
  script:
    - pip install jinja2
    - python tests/test_data.py
  when: manual

build_render_ws_docker:
  cache:
    paths:
    - tests/test_files
    untracked: true
    policy: pull
  stage: build
  image: docker:$DOCKER_VERSION-git
  tags:
    - docker7
  services:
    - docker:$DOCKER_VERSION-dind
  before_script:
    - docker info
    - touch tests/test_files/*.n5
  script:
    - git clone --depth 1 https://github.com/saalfeldlab/render.git render -b $RENDER_BRANCH
    - cd render
    - sed -i 's/MONGO_HOST=""/MONGO_HOST="mymongo"/' Dockerfile
    - echo $CI_REGISTRY_PASSWORD | docker login -u $CI_REGISTRY_USER $CI_REGISTRY --password-stdin && docker build -t "$CI_REGISTRY_IMAGE"/render --target render-ws . && docker push "$CI_REGISTRY_IMAGE"/render
  when: manual


build_render_clientscripts:
  stage: build
  image: azul/zulu-openjdk:11
  before_script:
    - apt-get update && apt-get install -y git  curl  maven
  script:
    - git clone --depth 1 https://github.com/saalfeldlab/render.git render -b $RENDER_BRANCH
    - ./render/render-ws/src/main/scripts/install.sh
    - export JAVA_HOME=`readlink -m ./render/deploy/*jdk*`
    - mvn package -pl render-ws-java-client  -am -DskipTests -f render/pom.xml
  cache:
    key: render
    paths:
      - render
    untracked: true
    policy: push
  when: manual

build_test_docker:
  stage: build
  image: docker:$DOCKER_VERSION-git
  tags:
    - docker7
  services:
    - docker:$DOCKER_VERSION-dind
  before_script:
    - docker info
  script:
    - echo $CI_REGISTRY_PASSWORD | docker login -u $CI_REGISTRY_USER $CI_REGISTRY --password-stdin && docker build -t "$CI_REGISTRY_IMAGE"/rmaddons-test . && docker push "$CI_REGISTRY_IMAGE"/rmaddons-test
  when: manual


tests:
  image: registry.git.embl.de/schorb/rendermodules-addons/rmaddons-test
  stage: test
  services:
    - name: mongo:4
      alias: mymongo
    - name: registry.git.embl.de/schorb/rendermodules-addons/render
      alias: myrender
  variables:
    FF_NETWORK_PER_BUILD: 1
    COVERAGE_PROCESS_START: 1
    RENDER_DIR: ./render
  cache:
    key: render
    paths:
      - render
    untracked: true
    policy: pull
  before_script:
#    - apt-get update && apt-get install -y git curl wget
#    - "curl -X GET --header 'Accept: application/json' 'http://myrender:8080/render-ws/v1/serverProperties'"
#    - pip install pymongo
#    - python -c "from pymongo import MongoClient; client=MongoClient('mymongo'); print(client.server_info())"
#    - chmod 777 -R /opt/conda/
#    - useradd testuser
#    - su testuser -c 'conda install python=3.7 -y'
#    - su testuser -c 'conda install  git mobie_utils -c conda-forge -y'
#    - pip install render-python
#    - pip install git+https://github.com/AllenInstitute/asap-modules/ --no-deps
#    - pip install git+https://git.embl.de/schorb/pyem
#    - pip install git+https://github.com/mobie/mobie-utils-python --no-deps
#    - pip install -r requirements.txt
#    - pip install -r test_requirements.txt
#    - pip install git+https://github.com/mobie/mobie-utils-python
#    - su testuser -c 'mkdir -p $(python -m site --user-site)'
#    - su testuser -c 'echo "import coverage" > $(python -m site --user-site)/subprocess_coverage.pth'
#    - su testuser -c 'echo "coverage.process_startup()" >> $(python -m site --user-site)/subprocess_coverage.pth'

  #    - git pull origin $CI_COMMIT_BRANCH
  script:
    - export JAVA_HOME=`readlink -m ./render/deploy/*jdk*`
    - export PATH=$PATH:$JAVA_HOME/bin
#    - chmod +rx -R *
#    - pwd
#    - ls
    - coverage run -m pytest
#    - coverage combine
    - coverage xml
    - coverage-badge
    - coverage report
  coverage: '/TOTAL.+ ([0-9]{1,3}%)/'
#  rules:
#    - if: $CI_COMMIT_REF_NAME != $CI_DEFAULT_BRANCH

pages:
  image: registry.git.embl.de/schorb/rendermodules-addons/rmaddons-test
  stage: deploy

  before_script:
  - pip install -U sphinx
#  - pip install git+https://github.com/AllenInstitute/asap-modules --no-deps
#  - pip install git+https://git.embl.de/schorb/pyem
  - pip install -r requirements.txt
  script:
  - sphinx-build -b html docs public
  artifacts:
    paths:
    - public
  only:
  - main
  - doctest