setup.py

#!/usr/bin/env python
import sys
from setuptools import setup, find_packages
from setuptools.command.test import test as TestCommand
import logging


# class PyTest(TestCommand, object):
#     user_options = [('pytest-args=', 'a', "Arguments to pass to pytest")]
#
#     def initialize_options(self):
#         TestCommand.initialize_options(self)
#         self.pytest_args = ""
#
#     def run(self):
#         try:
#             import cv2  # noqa: F401
#             import em_stitch  # noqa: F401
#             self.distribution.install_requires = [
#                 i for i in self.distribution.install_requires
#                 if not i.startswith('em_stitch')]
#         except ImportError:
#             pass
#         print(self.distribution.install_requires)
#         super(PyTest, self).run()
#
#     def run_tests(self):
#         # import here, cause outside the eggs aren't loaded
#         import shlex
#         import pytest
#         self.pytest_args += " --cov=rendermodules --cov-report html "\
#                             "--junitxml=test-reports/test.xml"
#         FORMAT = "[%(filename)s:%(lineno)s - %(funcName)20s() ] %(message)s"
#         logging.basicConfig(format=FORMAT)
#         errno = pytest.main(shlex.split(self.pytest_args))
#         sys.exit(errno)
#
#
# with open('test_requirements.txt', 'r') as f:
#     test_required = f.read().splitlines()

with open('requirements.txt', 'r') as f:
    required = f.read().splitlines()

setup(name='rendermodules-addons',
      use_scm_version=True,
      description=(
          'An additional set of python modules for processing volume image data '
          'using render, developed for processing Serial Blockface SEM and TEM'
          ' images. See http://github.com/saalfeldlab/render'),
      author=(
          'Martin Schorb'),
      author_email='schorb@embl.de',
      url='https://git.embl.de/schorb/rendermodules-addons',
      packages=find_packages(),
      package_data={
          '': ['LICENSE',
               '*.md']},
      install_requires=required,
      setup_requires=['flake8', 'setuptools_scm'],
      # tests_require=test_required,
      # cmdclass={'test': PyTest}
      )