Clean up automate resoures

.gitignore

@@ -23,6 +23,8 @@ prototypes/forge_sandbox.ipynb
 
 travis.tar
 .mdfsecrets
+.mdfsecrets.*
 aws/python
 .idea/
-secrets.env
+secrets.env
+

automate/create_new_flow.py

@@ -0,0 +1,90 @@
+import json
+import sys
+
+import globus_sdk
+
+import minimus_mdf_flow
+from globus_auth_manager import GlobusAuthManager
+from globus_automate_flow import GlobusAutomateFlow, GlobusAutomateFlowDef
+
+if len(sys.argv) > 1:
+    secrets_file = f".mdfsecrets.{sys.argv[1]}"
+else:
+    secrets_file = ".mdfsecrets"
+
+with open(secrets_file, 'r') as f:
+    globus_secrets = json.load(f)
+
+smtp_send_credentials = [{
+    "credential_type": "smtp",
+    "credential_value": {
+        "hostname": globus_secrets['smtp_hostname'],
+        "username": globus_secrets['smtp_user'],
+        "password": globus_secrets['smtp_pass']
+    }
+}]
+
+conf_client = globus_sdk.ConfidentialAppAuthClient(
+    globus_secrets['API_CLIENT_ID'], globus_secrets['API_CLIENT_SECRET']
+)
+cc_authorizer = globus_sdk.ClientCredentialsAuthorizer(conf_client, globus_sdk.FlowsClient.scopes.manage_flows)
+
+flows_client = globus_sdk.FlowsClient(authorizer=cc_authorizer)
+
+with open("mdf_flow_config.json") as f:
+    config = json.load(f)
+
+description = "MDF Connect Flow deployed manually"
+globus_auth = GlobusAuthManager(globus_secrets['API_CLIENT_ID'], globus_secrets['API_CLIENT_SECRET'])
+flow_def=minimus_mdf_flow.flow_def(
+    smtp_send_credentials=smtp_send_credentials,
+    sender_email=config['sender_email'],
+    flow_permissions=config['flow_permissions'],
+    description=description,
+    administered_by=[
+        'urn:globus:groups:id:5fc63928-3752-11e8-9c6f-0e00fd09bf20' # MDF Connect Admins
+    ])
+
+flow_def.title = "Production MDF Ingest Flow"
+mdf_flow = GlobusAutomateFlow.from_flow_def(client=flows_client,
+                                            flow_def=flow_def,
+                                            globus_auth=globus_auth)
+
+print(mdf_flow)
+
+mdf_flow.save_flow("mdf_flow_info.prod.json")
+
+print("MDF Flow deployed", mdf_flow)
+submitting_user_scope_id = mdf_flow.get_scope_id_for_runAs_role('SubmittingUser')['scopes'][0]['id']
+print(f"RunAs Dependent scope ID = {submitting_user_scope_id}")
+
+submitting_user_scope_uri = mdf_flow.get_scope_uri_for_runAs_role('SubmittingUser')
+print(f"RunAs Dependent Scope URI (will appear in the dict of dependent scopes in the authorizer) = {submitting_user_scope_uri}")
+
+print("PUT this to https://auth.globus.org/v2/api/scopes/:SCOPE_ID where SCOPE_ID is the ID of your API's scope")
+connect_scope_def = {
+    "scope": {
+        "name": "MDF Connect",
+        "description": "Submit data to MDF Connect",
+        "scope_suffix": "connect",
+        "dependent_scopes": [
+            {
+                "scope": "80fa5a88-ae26-4db7-be3a-c5f4cf4ac8d2",
+                "optional": False,
+                "requires_refresh_token": False
+            },
+            {
+                "scope": "0b21a92f-2fed-4b2d-a481-50a58cc796b9",
+                "optional": False,
+                "requires_refresh_token": True
+            },
+             {
+                    "optional": False,
+                    "requires_refresh_token": True,
+                    "scope": submitting_user_scope_id
+            }
+        ]
+    }
+}
+
+print(json.dumps(connect_scope_def))