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Add codon_prob.py with a model to adjust codon probs by hit class #50

Merged
merged 10 commits into from
Sep 12, 2024
Merged

Add codon_prob.py with a model to adjust codon probs by hit class #50

merged 10 commits into from
Sep 12, 2024

Commits on Aug 9, 2024

  1. a start 

    format

WIP

some cleanup, to be continued

WIP

first draft codon_prob.py

Cleanup, and finish loss

WIP

WIP

WIP

working? branch length opt
    @willdumm
    willdumm committed Aug 9, 2024
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Commits on Aug 12, 2024

  1. finish refactoring for rebase

    @willdumm
    willdumm committed Aug 12, 2024
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Commits on Aug 13, 2024

  1. checkpoint before major refactor

    @willdumm
    willdumm committed Aug 13, 2024
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  2. give cceloss logits

    @willdumm
    willdumm committed Aug 13, 2024
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  3. some cleanup

    @willdumm
    willdumm committed Aug 13, 2024
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Commits on Sep 9, 2024

  1. some cleanup

    @willdumm
    willdumm committed Sep 9, 2024
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Commits on Sep 10, 2024

  1. some cleanup

    @willdumm
    willdumm committed Sep 10, 2024
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  2. add tests

    @willdumm
    willdumm committed Sep 10, 2024
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Commits on Sep 11, 2024

  1. respond to Erick's comments

    @willdumm
    willdumm committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. respond to Erick's comments

    @willdumm
    willdumm committed Sep 12, 2024
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