corrected the improper use of uninitialized sabutan environemnt variable

medvedevgroup · Apr 3, 2018 · cc83af0 · cc83af0
1 parent ae4fc10
commit cc83af0
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/scripts/order_query_results.sh b/scripts/order_query_results.sh
@@ -55,7 +55,7 @@ cat temp.${sabutanOutput}.leaf_to_queries \
       #
       cat ${queryFiles} \
         | python ${thisScriptDir}/pluck_from_fasta.py --sequences=${queries} \
-        | ${sabutan} query \
+        | sabutan query \
           --tree=temp.${sabutanOutput}.${leaf}.sbt --threshold=${specificity} \
           --countallkmerhits \
         | awk '/^[*]/  { }

diff --git a/scripts/order_query_results_workaround.sh b/scripts/order_query_results_workaround.sh
@@ -57,7 +57,7 @@ cat temp.${tempFileId}.leaf_to_queries \
       #
       cat ${queryFiles} \
         | python ${thisScriptDir}/pluck_from_fasta.py --sequences=${queries} \
-        | ${sabutan} query \
+        | sabutan query \
           --tree=temp.${tempFileId}.${leaf}.sbt --threshold=${specificity} \
           --countallkmerhits \
         | awk '/^[*]/  { }