ci(dependabot): bump actions/upload-artifact from 3 to 4 #745
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Analyze | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| jobs: | |
| Analyze: | |
| if: ${{ !contains(github.event.head_commit.message, 'Bump version') }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| os: [ubuntu-latest] | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: setup.py | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[all] | |
| - name: Pack test recipe | |
| run: | | |
| pack -r cellpack/tests/recipes/v2/test_spheres.json -c cellpack/tests/packing-configs/test_config.json | |
| - name: Modify JSON with PR sub_directory path | |
| run: | | |
| jq --arg branch_name "${{ github.ref_name }}" '.create_report.output_image_location |= "https://cellpack-results.s3.us-west-2.amazonaws.com/\($branch_name)/spheresSST/figures"' cellpack/tests/analysis-configs/PR_analysis_config.json > cellpack/tests/analysis-configs/PR_analysis_config_temp.json | |
| mv cellpack/tests/analysis-configs/PR_analysis_config_temp.json cellpack/tests/analysis-configs/PR_analysis_config.json | |
| - name: Run analysis code | |
| run: analyze -r cellpack/tests/recipes/v2/test_spheres.json -a cellpack/tests/analysis-configs/PR_analysis_config.json -p cellpack/tests/outputs/test_spheres/spheresSST | |
| - name: Upload results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: results | |
| path: cellpack/tests/outputs/test_spheres/ | |
| Comment: | |
| runs-on: ubuntu-latest | |
| needs: [Analyze] | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Configure AWS credentials for dependabot | |
| if: ${{ github.actor == 'dependabot[bot]' }} | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| aws-access-key-id: ${{ secrets.DEPENDABOT_AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.DEPENDABOT_AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-west-2 | |
| - name: Configure AWS credentials | |
| if: ${{ github.actor != 'dependabot[bot]' }} | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-west-2 | |
| - uses: actions/download-artifact@v3 | |
| - name: Copy files to results bucket | |
| run: aws s3 cp ./results s3://cellpack-results/${{ github.ref_name }}/ --recursive --acl public-read | |
| - uses: iterative/setup-cml@v1 | |
| - name: Update comment for dependabot | |
| if: ${{ github.actor == 'dependabot[bot]' }} | |
| env: | |
| REPO_TOKEN: ${{ secrets.DEPENDABOT_TOKEN }} | |
| run: | | |
| cml comment update --watermark-title="{workflow} report" ./results/analysis_report.md --target=pr | |
| cat ./results/analysis_report.md | |
| - name: Update comment for PR | |
| if: ${{ github.actor != 'dependabot[bot]' }} | |
| env: | |
| REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| cml comment update --watermark-title="{workflow} report" ./results/analysis_report.md --target=pr | |
| cat ./results/analysis_report.md |