add log to read_stats #175

metagenome-atlas · Feb 27, 2019 · 3759a8b · 3759a8b
1 parent a9641e1
commit 3759a8b
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/atlas/rules/qc.snakefile b/atlas/rules/qc.snakefile
@@ -107,6 +107,8 @@ rule get_read_stats:
     run:
         import datetime
         import shutil
+        import sys
+        sys.stderr = open(log[0], 'w')
 
         timestamp = datetime.datetime.now().strftime('%Y-%m-%d-%X')