Refactor Protocol Files - #244
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Extracted machine-readable protocols from markdown files into separate YAML-LD files. - For non-`AGENTS.md` files, the markdown files have been updated to indicate they are for human documentation purposes only. - `AGENTS.md` files have been left untouched.
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Extracted machine-readable protocols from markdown files into separate YAML-LD files. This separates human-readable documentation from machine-readable protocols.
PR created automatically by Jules for task 15223702544575155406