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feat: codify Paranormal Quantum Attention Networks as a DocBook 5.2 white paper - #9

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feat: codify Paranormal Quantum Attention Networks as a DocBook 5.2 white paper#9
metavacua wants to merge 12 commits into
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claude/pqan-codification

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Codifies the Paranormal Quantum Attention Networks (PQAN) research report into a durable scholarly white paper under papers/ai_and_agents/paranormal-quantum-attention-networks/, with an independently verified bibliography, a CI build, and GitHub Pages publishing.

What's here

  • Canonical source: DocBook 5.2 XML (validates against the stock DocBook 5.2 RELAX NG grammar), with XSLT-derived HTML5 (Dublin Core <meta> + Schema.org JSON-LD + MathJax) and LaTeX/PDF. Native-DocBook <info> metadata; math authored once as <mathphrase role="tex">.
  • Build pipeline (Makefile): wf (well-formed + XInclude), check-refs (every citation linkend resolves — build fails otherwise), html, latex, pdf, validate (RNG), publish (renders into docs/).
  • Toolchain installed via tools/install-docbook-toolchain.sh (xmllint + xsltproc; texlive is CI-only).

References — independently re-verified

The source report cited [1]–[17] with no reference list (and [7] was cited nowhere). A deep-research pass (104 agents; fan-out search → fetch → 3-vote adversarial verification → synthesis) replaced them with 15 real sources, each labeled by verification tier:

  • Confirmed 3-0 (clusters 1–5): quantum-transformer survey, QSANN, Meyer & Lewis, Stoudenmire & Schwab, Han et al., Glasser et al., Tang et al., Zizzi, da Costa & Krause.
  • Located in search (real/canonical, not re-verified): Lloyd–Mohseni–Rebentrost, Preskill, McClean, Tarski/SEP, GRN tensor-network paper, French & Krause.

Contradicted/unsupported claims eliminated per the maintainer's policy: the Bitcoin/ECC qubit figures (unsubstantiated), "quantum computing in genomics/human health" (no source), and the claim that density-matrix embeddings are learned via variational quantum circuits (the anchor work uses classical neural models — corrected, author fixed to Meyer & Lewis). Author fields for recent papers were re-checked against arXiv. Full per-claim verdict table in scratch/notes.md.

CI + Pages

🤖 Generated with Claude Code

metavacua and others added 12 commits July 5, 2026 22:41
Adds folder structure, DocBook build Makefile (wf/check-refs/validate/html/latex/pdf),
RELAX NG Compact schema for project conventions, and an install script for the
xmllint+xsltproc toolchain.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Uses native DocBook <info> elements so the article validates against the stock
DocBook 5.2 RELAX NG grammar; Dublin Core meta tags and Schema.org JSON-LD are
derived from these by the XSLT rather than embedded as foreign dc:/schema: elements.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Faithful DocBook encoding (7 top-level sections, nested subsections, comparison table,
ordered roadmap, math via <mathphrase role=tex>). Citations are <xref> into a
bibliography whose 18 entries are role=provisional pending independent reference
verification; report marker [7] (cited nowhere) omitted.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Binds the xlink namespace at both stylesheet roots and adds a DocBook <link> ->
LaTeX \href template so arXiv/DOI links in the bibliography render in both HTML and TeX.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Replaces the 18 provisional bibliography entries with 16 verified sources (per-claim
verdict table in scratch/notes.md). 25 claims confirmed by unanimous 3-vote adversarial
check (clusters 1-5); qPCA/NISQ/barren-plateaus/Tarski/GRN located in search.

Applies the owner's 'eliminate contradicted claims' policy:
- CLUSTER 2: density-matrix embeddings are learned by classical NEURAL models, not
  variational quantum circuits (author Meyer & Lewis, not Sadrzadeh) - prose corrected.
- CLUSTER 8: Bitcoin/ECC quantum-threat figures unsubstantiated - claim eliminated.
- CLUSTER 7: 'quantum computing in genomics/human health' unsourced - claim eliminated;
  gene-regulatory tensor-network claim retained (arXiv:2509.06891).
Adds BibTeX source-of-record (src/bibliography.bib). Marker [7] omitted (cited nowhere).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Addresses two attribution defects found in review:
- Remove bib-qnlp-density (QASA, a quantum-attention paper) which was cited on 17
  density-matrix claims it does not support. All 59 sites retained a contextually-correct
  citation (QSANN for attention, Meyer & Lewis for density-matrix), so the key was
  dropped; QASA stays credited in the QSANN entry note. 16 -> 15 entries.
- Correct author fields verified against arXiv: survey (Hui Zhang et al.; invented first
  names fixed), QASA (Chi-Sheng Chen & En-Jui Kuo), MPS (Xun Tang), GRN authors added.
  Soften note wording to 'Claim support confirmed 3-0' so it does not over-claim that
  every bibliographic field was adversarially verified.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Adds .github/workflows/docbook-papers.yml: on PRs into main and pushes to main, builds
the paper (make all = wf + check-refs + HTML + LaTeX, blocking), compiles the PDF on the
runner with a targeted texlive subset (blocking - the local host omits pdflatex), runs
DocBook 5.2 RNG validation and a docs/ sync check (non-blocking), and uploads outputs.

Fixes a fatal pdflatex error: the Unicode arrow U+2194 (from a bibliography note) is now
mapped to \ensuremath{\leftrightarrow} in latex.xsl (HTML keeps the glyph). Adds a
'publish' Makefile target that renders the HTML into docs/ for legacy GitHub Pages, and
makes the pdf target halt-on-error with visible logs for CI.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Renders the DocBook HTML into docs/ai_and_agents/ (served by legacy Pages from main/docs)
and links it from the docs/index.html table of contents under a new 'Part III: AI and
Agents' section. Publishes on merge to main.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
texlive-fonts-recommended under --no-install-recommends does not pull lmodern.sty on
ubuntu-latest; add it explicitly so pdflatex finds the preamble font package.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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