Fix inconsistent arguments order in database.query

metgem · Nov 21, 2023 · a4759a6 · a4759a6
1 parent 4d74dae
commit a4759a6
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/libmetgem/_database.pyx b/libmetgem/_database.pyx
@@ -357,7 +357,7 @@ def query(str filename, vector[int] indices, vector[double] mzvec, list datavec,
           int min_intensity, int parent_filter_tolerance,
           int matched_peaks_window, int min_matched_peaks_search,
           double min_cosine, double analog_mz_tolerance=0.,
-          double mz_min = 50., bool positive_polarity=True, object callback=None):
+          bool positive_polarity=True, double mz_min = 50., object callback=None):
     cdef:
         bytes fname_bytes
         char *fname

diff --git a/libmetgem/database.py b/libmetgem/database.py
@@ -19,9 +19,8 @@ def query(fname: str, indices: List[int], mzvec: List[float],
           min_matched_peaks: int, min_intensity: int,
           parent_filter_tolerance: int, matched_peaks_window: int,
           min_matched_peaks_search: int, min_cosine: float,
-          analog_mz_tolerance: float=0., mz_min: float=50.,
-          positive_polarity: bool=True,
-          callback: Callable[[int], bool]=None) -> Dict[int, List[Dict[str, Union[float, int]]]]:
+          analog_mz_tolerance: float=0., positive_polarity: bool=True,
+          mz_min: float=50., callback: Callable[[int], bool]=None) -> Dict[int, List[Dict[str, Union[float, int]]]]:
     """
         Query an SQLite database containing MS/MS spectra for either standards
         (spectra with similar parent ion's *m/z* and similar MS/MS spectrum) or