Release #13
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| name: Release | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| linux: | |
| description: 'Run build on Linux' | |
| type: boolean | |
| required: false | |
| default: true | |
| windows: | |
| description: 'Run build on Windows' | |
| type: boolean | |
| required: false | |
| default: true | |
| macos: | |
| description: 'Run build on macOS' | |
| type: boolean | |
| required: false | |
| default: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| jobs: | |
| print-job: | |
| name: Print event | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Dump GitHub context | |
| env: | |
| GITHUB_CONTEXT: ${{ toJson(github) }} | |
| run: | | |
| echo "$GITHUB_CONTEXT" | |
| build-release: | |
| name: Build | |
| needs: [print-job, generate-matrix] | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| os: ${{ fromJSON(needs.generate-matrix.outputs.os) }} | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - name: Cache conda | |
| if: ${{ !env.ACT }} | |
| id: cache | |
| uses: actions/cache@v3 | |
| env: | |
| # Increase this value to reset cache if environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: | | |
| ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('metgem/environment*.yml') }} | |
| - name: Set up Python | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: metgem | |
| mamba-version: "*" | |
| channel-priority: strict | |
| channels: conda-forge,metgem,bioconda | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: metgem/environment.yml | |
| - run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| - name: Install Build Dependencies | |
| uses: ./.github/actions/install_build_dependencies | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| if: ${{ github.event_name == 'workflow_dispatch' }} | |
| - name: Build | |
| id: build | |
| uses: ./.github/actions/build | |
| - name: Run Tests | |
| id: tests | |
| uses: ./.github/actions/tests | |
| - name: Upload Tests Artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: tests | |
| path: ${{ steps.tests.outputs.log }} | |
| - name: Get/Create Release | |
| if: ${{ !env.ACT }} | |
| id: create-release | |
| uses: ncipollo/release-action@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| prerelease: true | |
| allowUpdates: true | |
| updateOnlyUnreleased: true | |
| repo: metgem | |
| - name: Upload Release Asset | |
| id: upload-release-asset | |
| uses: actions/upload-release-asset@v1 | |
| with: | |
| upload_url: ${{ steps.create-release.outputs.upload_url }} | |
| asset_path: metgem_packaging/${{ steps.build.outputs.asset-name }} | |
| asset_name: ${{ steps.build.outputs.asset-basename }}-${{ github.ref }}.${{ steps.build.outputs.asset-ext }} | |
| asset_content_type: ${{ steps.build.outputs.asset-mimetype }} | |
| generate-matrix: | |
| runs-on: ubuntu-latest | |
| name: "Generate matrix job specs" | |
| outputs: | |
| os: ${{ steps.generate-matrix.outputs.os }} | |
| steps: | |
| - name: generate-matrix | |
| id: generate-matrix | |
| run: | | |
| if [ "${{ github.event_name }}" == "workflow_dispatch" ]; then | |
| os=() | |
| if [ "${{ github.event.inputs.linux}}" == "true" ]; then | |
| os+=('ubuntu') | |
| fi | |
| if [ "${{ github.event.inputs.windows}}" == "true" ]; then | |
| os+=('windows') | |
| fi | |
| if [ "${{ github.event.inputs.macos }}" == "true" ]; then | |
| os+=('macos') | |
| fi | |
| os=$(printf ', "%s"' "${os[@]}") | |
| os="[${os:2}]" | |
| echo "[INFO] OS selected: $os" | |
| echo "os=$os" >> $GITHUB_OUTPUT | |
| else | |
| echo 'os=["ubuntu","windows","macos"]' >> $GITHUB_OUTPUT | |
| fi |