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"""MetGem plugin to download ISDB""" | ||
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__version__ = '1.2' | ||
__version__ = '1.3' | ||
__description__ = "MetGem plugin to download ISDB" | ||
__author__ = "Nicolas Elie" | ||
__email__ = "[email protected]" | ||
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@@ -21,7 +21,7 @@ def get_items(self, tree): | |
json_s = tree.find('.//script[@type="application/ld+json"]').text | ||
json_load = json.loads(json_s) | ||
description = json_load.get('description', | ||
'\u003cp\u003eAn In Silico spectral DataBase (\u003cstrong\u003eISDB\u003c/strong\u003e) of natural products calculated\u0026nbsp;from structures aggregated in the frame of the LOTUS Initiative.\u003c/p\u003e\n\n\u003cp\u003eThis spectral file is in positive ionisation mode only. Fragmented using cfm-predict 3.0\u0026nbsp;\u003ca href=\"https://cfmid.wishartlab.com/\"\u003ehttps://cfmid.wishartlab.com/\u003c/a\u003e\u003c/p\u003e\n\n\u003cp\u003eIntensities at the low, medium and high energy level have been meaned.\u003c/p\u003e\n\n\u003cp\u003e\u0026nbsp;\u003c/p\u003e\n\n\u003cp\u003eIn silico spectral database preparation and use for dereplication initially\u0026nbsp;described in\u0026nbsp;\u003cem\u003eIntegration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication\u003c/em\u003e \u003ca href=\"https://doi.org/10.1021/ACS.ANALCHEM.5B04804\"\u003ehttps://doi.org/10.1021/ACS.ANALCHEM.5B04804\u003c/a\u003e\u003c/p\u003e\n\n\u003cp\u003eSee \u003ca href=\"http://oolonek.github.io/ISDB/\"\u003ehttp://oolonek.github.io/ISDB/\u003c/a\u003e for associated spectral matching scripts\u003c/p\u003e\n\n\u003cp\u003eLOTUS Initiative initially described in\u0026nbsp;\u003ca href=\"https://doi.org/10.7554/eLife.70780\"\u003ehttps://doi.org/10.7554/eLife.70780\u003c/a\u003e\u003c/p\u003e\n\n\u003cp\u003e\u0026nbsp;\u003c/p\u003e\n\n\u003cp\u003e\u0026nbsp;\u003c/p\u003e') | ||
'\u003cp\u003eAn In Silico spectral DataBase (\u003cstrong\u003eISDB\u003c/strong\u003e) of natural products calculated\u0026nbsp;from structures aggregated in the frame of the LOTUS Initiative (\u003ca href=\"https://doi.org/10.7554/eLife.70780\"\u003ehttps://doi.org/10.7554/eLife.70780)\u003c/a\u003e.\u003cbr\u003e\nFragmented using cfm-predict 4 (\u003ca href=\"https://doi.org/10.1021/acs.analchem.1c01465\"\u003ehttps://doi.org/10.1021/acs.analchem.1c01465\u003c/a\u003e) .\u003c/p\u003e\n\n\u003cp\u003eIn silico spectral database preparation and use for dereplication initially\u0026nbsp;described in\u0026nbsp;\u003cem\u003eIntegration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication\u003c/em\u003e \u003ca href=\"https://doi.org/10.1021/ACS.ANALCHEM.5B04804\"\u003ehttps://doi.org/10.1021/ACS.ANALCHEM.5B04804\u003c/a\u003e\u003c/p\u003e\n\n\u003cp\u003eSee\u0026nbsp;\u003ca href=\"https://github.com/mandelbrot-project/spectral_lib_builder\"\u003ehttps://github.com/mandelbrot-project/spectral_lib_builder\u003c/a\u003e for associated building scripts.\u003c/p\u003e\n\n\u003cp\u003eSee\u0026nbsp;\u003ca href=\"https://github.com/mandelbrot-project/spectral_lib_matcher\"\u003ehttps://github.com/mandelbrot-project/spectral_lib_matcher\u003c/a\u003e for associated matching scripts.\u003c/p\u003e') | ||
identifier = json_load.get('identifier', '') | ||
version = json_load.get('version', '') | ||
version = f"Version {version}" if version else '' | ||
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