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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 29 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 83 repositories
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 7 5 110 (2 issues need help) 16 Updated Feb 13, 2025
  • workflow_documentation Public

    This repository contains the documentation template for the NDMC workflows.

    microbiomedata/workflow_documentation’s past year of commit activity
    Python 2 2 2 1 Updated Feb 13, 2025
  • portal_user_guide Public
    microbiomedata/portal_user_guide’s past year of commit activity
    JavaScript 0 2 0 1 Updated Feb 13, 2025
  • NMDC_documentation Public

    Document workflows, schemas, and portal

    microbiomedata/NMDC_documentation’s past year of commit activity
    2 3 18 3 Updated Feb 13, 2025
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 5 CC0-1.0 0 16 7 Updated Feb 13, 2025
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 49 8 Updated Feb 13, 2025
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    microbiomedata/external-metadata-awareness’s past year of commit activity
    Jupyter Notebook 0 0 19 1 Updated Feb 12, 2025
  • mg_annotation Public

    Metagenome Annotation Workflow

    microbiomedata/mg_annotation’s past year of commit activity
    WDL 4 7 3 3 Updated Feb 12, 2025
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 9 0 166 15 Updated Feb 12, 2025
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 29 CC0-1.0 8 364 (1 issue needs help) 6 Updated Feb 12, 2025
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