Bump notebook from 7.0.7 to 7.2.2 in /package #12
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Bumps [notebook](https://github.com/jupyter/notebook) from 7.0.7 to 7.2.2. - [Release notes](https://github.com/jupyter/notebook/releases) - [Changelog](https://github.com/jupyter/notebook/blob/@jupyter-notebook/[email protected]/CHANGELOG.md) - [Commits](https://github.com/jupyter/notebook/compare/@jupyter-notebook/[email protected]...@jupyter-notebook/[email protected]) --- updated-dependencies: - dependency-name: notebook dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]>
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commit 9ab6812 Author: chingiz-kb <[email protected]> Date: Thu Jul 3 19:16:46 2025 -0400 fixing batch index issue for mi2 batch endpoint example (#65) * fixing batch index issue for mi2 batch endpoint example * Added comments to CXR and MIP batch endpoint notebooks to clarify the change needed in CSV batch file naming. * changed the previous `mii` abreviation to `mi2` for consistency * markdown highlight changes commit 6b57e50 Merge: cb15ac5 b40bc5d Author: Jameson <[email protected]> Date: Mon Mar 24 17:29:14 2025 -0700 Merge pull request #52 from microsoft/jameson/mi2-readme-update add mi2-finetuning to readme commit b40bc5d Author: Jameson Merkow <[email protected]> Date: Mon Mar 24 21:57:04 2025 +0000 add mi2-finetuning to readme commit cb15ac5 Merge: 42d048f 5a9d883 Author: Jameson <[email protected]> Date: Mon Mar 24 12:15:27 2025 -0700 Merge pull request #45 from microsoft/mablonde/mi2-finetune Fine-tuning notebook for MI2 commit 5a9d883 Merge: 529e309 42d048f Author: Jameson Merkow <[email protected]> Date: Mon Mar 24 17:40:41 2025 +0000 Merge remote-tracking branch 'origin/main' into mablonde/mi2-finetune commit 42d048f Author: Jameson Merkow <[email protected]> Date: Mon Mar 24 16:36:11 2025 +0000 remove mup dependency commit 529e309 Author: Jameson Merkow <[email protected]> Date: Mon Mar 24 16:32:15 2025 +0000 minor formatting changes to mi2-finetuning commit 7eda8d3 Author: Matthias Blondeel <[email protected]> Date: Mon Mar 24 15:25:54 2025 +0000 Updating with latest numbers commit 112e406 Author: Jameson Merkow <[email protected]> Date: Sat Mar 22 23:09:03 2025 +0000 fix evaluation bug commit ad61b76 Author: Jameson Merkow <[email protected]> Date: Sat Mar 22 18:41:41 2025 +0000 minor updates to notebook documentation commit 475432d Author: Matthias Blondeel <[email protected]> Date: Sat Mar 22 02:00:48 2025 +0000 Fix gpu cluster name commit e620fec Author: Matthias Blondeel <[email protected]> Date: Sat Mar 22 01:55:35 2025 +0000 Updated numbers and inline images commit 2d60fde Author: Jameson Merkow <[email protected]> Date: Fri Mar 21 16:46:43 2025 +0000 minor comment updates to mi2-finetuning commit bc417f2 Author: Matthias Blondeel <[email protected]> Date: Fri Mar 21 16:01:55 2025 +0000 Updating now that the final pipeline is published commit 156e7e6 Author: Ivan Tarapov <[email protected]> Date: Thu Mar 20 21:49:08 2025 -0700 Add detailed explanations of Azure ML pipelines and components commit 1be38c7 Author: Jameson Merkow <[email protected]> Date: Thu Mar 20 22:45:06 2025 +0000 fix typos and add final remarks in mi2-finetuning commit 415b699 Merge: 52acd8f c150e62 Author: Jameson Merkow <[email protected]> Date: Thu Mar 20 22:19:40 2025 +0000 Merge remote-tracking branch 'origin/main' into mablonde/mi2-finetune commit 52acd8f Author: Jameson Merkow <[email protected]> Date: Thu Mar 20 22:19:22 2025 +0000 update mi2 fine-tuning notebook commit c150e62 Merge: cb0a80a 5b0478f Author: frank-msft <[email protected]> Date: Wed Mar 19 18:35:14 2025 -0700 Merge pull request #43 from microsoft/frank/batch-deployment Add sample notebooks to deploy batch endpoint for mii, mip and cxr commit b65deb4 Author: Jameson Merkow <[email protected]> Date: Wed Mar 19 23:26:59 2025 +0000 add details about GPUs/batch size to m2- finetuning commit cb0a80a Author: Jameson Merkow <[email protected]> Date: Mon Mar 17 19:05:36 2025 +0000 replace io functions with healthcareai_toolkit functions and remove unused volume_utils.py commit 347d583 Author: Ivan Tarapov <[email protected]> Date: Sun Mar 16 23:02:08 2025 -0700 Update README.md to include details on 3D Image Search with MedImageInsight and clarify data download instructions. Updates to 3D image search notebook - linting, typos, better language commit c24b9ac Merge: f294b7e 0a7603f Author: Jameson Merkow <[email protected]> Date: Wed Mar 19 22:23:31 2025 +0000 Merge remote-tracking branch 'origin/main' into mablonde/mi2-finetune commit f294b7e Author: Jameson Merkow <[email protected]> Date: Wed Mar 19 22:22:33 2025 +0000 updates for mi2 fine-tuning commit c84446a Author: Matthias Blondeel <[email protected]> Date: Wed Mar 19 20:48:14 2025 +0000 Fixing arguments commit 2312c2b Author: Matthias Blondeel <[email protected]> Date: Wed Mar 19 13:33:49 2025 +0000 Updated based on feedback commit 0a7603f Merge: 7ef6218 5c68d93 Author: Alberto Santamaria-Pang <[email protected]> Date: Sat Mar 15 09:10:14 2025 -0700 Merge pull request #48 from microsoft/asma/3d_image_search Implemented edits in markdown commit 5c68d93 Author: Alberto Santamaria-Pang <[email protected]> Date: Sat Mar 15 15:58:48 2025 +0000 Implemented edits in markdown commit 7ef6218 Merge: ce20fb1 3e8d073 Author: Alberto Santamaria-Pang <[email protected]> Date: Fri Mar 14 18:38:32 2025 -0700 Merge pull request #47 from microsoft/asma/3d_image_search - Updated headings, titles, and structure to improve the reader's experience. - Ensured content is organized logically, guiding users through: - **Data Setup** - **Computing Embeddings** - **Creating a Search Model** - Added helpful notes to highlight key steps and important considerations. - Improved the **visualization of search results**, making it easier to interpret query images and retrieved matches. - Enhanced figure labels, legends, and layout for improved readability. - Expanded content to connect the tutorial to real-world applications such as: - **Lesion detection** - **Severity measurement** - **Diagnostic support** - Provided insights on interpreting performance metrics (e.g., **Precision @k**) and their clinical significance. - Included recommendations for optimizing the model for different use cases or imaging protocols. - Clarified the structure and purpose of the **3D-MIR** and **MSD** datasets. - Expanded guidance on: - Using the provided **training/testing splits**. - Understanding and applying the **pancreas labels and captions** file. commit 3e8d073 Author: Alberto Santamaria-Pang <[email protected]> Date: Sat Mar 15 01:30:44 2025 +0000 formatting with black black[jupyter]==22.6.0 commit 183e8e5 Author: Alberto Santamaria-Pang <[email protected]> Date: Sat Mar 15 01:20:45 2025 +0000 added function descriptions commit be23566 Author: Alberto Santamaria-Pang <[email protected]> Date: Sat Mar 15 01:20:27 2025 +0000 Refined narrative commit 284f19b Author: leeh43 <[email protected]> Date: Fri Mar 14 23:10:22 2025 +0000 change the resolution with dpi=300 commit c9a547e Author: leeh43 <[email protected]> Date: Fri Mar 14 22:04:11 2025 +0000 Updated 3d image search notebook with latest version of file path and visualizations, blacked files commit 1397cc7 Author: Matthias Blondeel <[email protected]> Date: Fri Mar 14 18:39:01 2025 +0000 Removing references to private registry commit 276df30 Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 21:14:12 2025 -0400 Updated the code - Ivan, Jameson, and Alberto's comments - Minor edits in the description of the main steps commit c910efe Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 21:11:32 2025 -0400 Delete azureml/advanced_demos/image_search/3d_image_search.ipynb commit 1028135 Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 20:59:58 2025 -0400 Delete azureml/advanced_demos/image_search/3D_search.png not needed - added the figure to the notebook. commit c2e5b1f Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 20:58:42 2025 -0400 Updated the notebook with Alberto's comments. commit 4f118ea Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 20:57:47 2025 -0400 Delete azureml/advanced_demos/image_search/3d_image_search.ipynb commit aaa7aa1 Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 19:58:39 2025 -0400 Updating the notebook with Alberto's comments commit 107d6b6 Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 19:57:26 2025 -0400 Delete azureml/advanced_demos/image_search/3d_image_search.ipynb commit 2222c74 Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 17:15:07 2025 -0400 Updating 3d_image_search.ipynb with Ivan and Jameson's comments commit 41d61d6 Author: Asma Ben Abacha <[email protected]> Date: Thu Mar 13 17:10:02 2025 -0400 Adding volume_utils.py commit 072f8c1 Author: Alberto Santamaria-Pang <[email protected]> Date: Wed Mar 12 13:59:06 2025 -0700 fixed bug in aggregated_df commit 5b0478f Author: Frank Tuan <[email protected]> Date: Wed Mar 12 19:52:22 2025 +0000 Format notebooks commit d562c84 Author: Frank Tuan <[email protected]> Date: Wed Mar 12 19:47:04 2025 +0000 Update documentation commit 26639d8 Author: Frank Tuan <[email protected]> Date: Tue Mar 11 18:11:41 2025 +0000 Update documentation and minor tweak to dataset creation commit ce20fb1 Author: Jameson Merkow <[email protected]> Date: Fri Feb 21 20:52:55 2025 +0000 lint with black commit 0c6fcff Author: Jameson Merkow <[email protected]> Date: Fri Feb 21 18:19:35 2025 +0000 add CxrReportGenClient and update image processing for MI2 commit 0bfccf8 Merge: 70225a6 958baee Author: Jameson <[email protected]> Date: Tue Mar 11 10:50:13 2025 -0700 Merge pull request #40 from microsoft/jameson/mashmellow-hf Fix marshmellow import error commit 16c1362 Author: Matthias Blondeel <[email protected]> Date: Tue Mar 11 16:25:34 2025 +0000 Updates commit 45a8d82 Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Mar 11 00:42:22 2025 +0000 WIP: Asma and Alberto changes commit d796e35 Author: Matthias Blondeel <[email protected]> Date: Sun Mar 9 16:10:19 2025 +0000 Feedback commit 9352e19 Author: Matthias Blondeel <[email protected]> Date: Fri Mar 7 22:27:03 2025 +0000 Initial version of MI2 fine-tuning commit d70a0fe Author: Frank Tuan <[email protected]> Date: Sun Mar 2 20:02:46 2025 +0000 Update notebook to display job result commit b5f19fc Author: Frank Tuan <[email protected]> Date: Sun Mar 2 18:43:42 2025 +0000 Add sample notebook for CxrReportGen batch endpoint deployment commit 9a12085 Author: Frank Tuan <[email protected]> Date: Fri Feb 28 23:53:43 2025 +0000 Add sample notebook to deploy batch endpoint for MedImageParse commit cab90b2 Author: Frank Tuan <[email protected]> Date: Mon Feb 24 13:04:45 2025 -0800 Format notebook using command line black commit baf1752 Author: Frank Tuan <[email protected]> Date: Mon Feb 24 12:55:12 2025 -0800 Format notebook commit 98f2441 Author: Frank Tuan <[email protected]> Date: Mon Feb 24 20:39:22 2025 +0000 Add sample notebook to deploy batch deployment for mi2 commit 958baee Author: Jameson Merkow <[email protected]> Date: Thu Feb 13 17:31:20 2025 +0000 Add 'sandbox/' to .gitignore commit 7b6f16c Author: Jameson Merkow <[email protected]> Date: Wed Feb 12 19:12:44 2025 +0000 Add marshmallow dependency to pyproject.toml commit 70225a6 Author: Ivan Tarapov <[email protected]> Date: Thu Feb 6 16:15:45 2025 -0800 Merge public main (#38) merge public into private commit a0c2fd8 Merge: ad66a33 96d8715 Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Feb 4 12:03:41 2025 -0800 Merge pull request #36 from microsoft/itarapov/readme_url_fix Fixing rad path link, added link to image search commit 96d8715 Author: Ivan Tarapov <[email protected]> Date: Tue Feb 4 11:26:46 2025 -0800 Fixing rad path link, added link to image search commit ad66a33 Merge: 4eb8cee 248af25 Author: Alberto Santamaria-Pang <[email protected]> Date: Fri Jan 31 13:02:39 2025 -0800 Merge pull request #34 from microsoft/alberto/2d_image_search 2D Image Search commit 248af25 Author: Ivan Tarapov <[email protected]> Date: Fri Jan 31 12:49:28 2025 -0800 Updated language with more flavor commit acb1f06 Author: Alberto Santamaria-Pang <[email protected]> Date: Fri Jan 31 19:27:03 2025 +0000 reformated with black[jupyter]==22.6.0 commit c443b47 Merge: 1b9cfb6 4eb8cee Author: Alberto Santamaria-Pang <[email protected]> Date: Fri Jan 31 19:14:36 2025 +0000 Resolved conflict by keeping/deleting package/healthcareai_toolkit/search/search_backbone.py commit 4eb8cee Merge: 88bf625 2e7a788 Author: Jameson <[email protected]> Date: Fri Jan 31 10:51:18 2025 -0800 Merge pull request #35 from microsoft/pr/fix-readme fix readme typos commit 2e7a788 Author: Jameson Merkow <[email protected]> Date: Fri Jan 31 18:50:12 2025 +0000 fix readme typos commit 1b9cfb6 Author: Alberto Santamaria-Pang <[email protected]> Date: Fri Jan 31 01:45:18 2025 +0000 added figure and validated results commit 9a586ff Author: Alberto Santamaria-Pang <[email protected]> Date: Thu Jan 30 00:49:30 2025 +0000 wip V.0.2 end-to-end commit 88bf625 Merge: 104f887 c8747f2 Author: Jameson <[email protected]> Date: Wed Jan 29 15:20:05 2025 -0800 Merge pull request #33 from microsoft/itarapov/readme_updates Readme updates commit f8f4b2c Author: Alberto Santamaria-Pang <[email protected]> Date: Wed Jan 29 20:01:20 2025 +0000 fixed outline and indexing in image file name and embedding commit 11feaaa Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 28 22:05:46 2025 +0000 fix: Level 4 heading markup (####) for paragraphs in Sections 1 and 2 commit 4846a17 Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 28 21:54:48 2025 +0000 added block code commit 05e92f0 Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 28 20:36:54 2025 +0000 added perform_inference_and_return_features to estimate optimized features commit c31fc88 Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 28 20:24:54 2025 +0000 added function perform_inference_and_return_features commit 3afe16f Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 28 17:32:51 2025 +0000 updated pre-computed embeddings file images_xray_mi2_embeddings.pkl commit 55db96b Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 28 06:40:33 2025 +0000 add: black formatting commit a1f9024 Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 28 06:17:48 2025 +0000 renamed folder to advanced_demos and updated content with latest changes commit 7c80a5c Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 28 06:15:06 2025 +0000 Removed search search folder from HTK, use instead ./azureml/advanced_demo/image_search/search_utils.py commit c8747f2 Author: Ivan Tarapov <[email protected]> Date: Mon Jan 27 11:35:06 2025 -0800 Update README to clarify dataset download instructions and package installation commands commit 104f887 Merge: 72c7ddd 4729199 Author: Jameson <[email protected]> Date: Mon Jan 27 09:41:16 2025 -0800 Merge pull request #30 from microsoft/peter/move_function_into_search_utils move function into utilis.py and integrate comments for search module commit 015a888 Author: Alberto Santamaria-Pang <[email protected]> Date: Mon Jan 27 17:27:37 2025 +0000 WIP: minor edits commit 2ded889 Author: Alberto Santamaria-Pang <[email protected]> Date: Sun Jan 26 19:51:49 2025 +0000 WIP: V0.1 working, cleaned code and added documentation. commit 494afc9 Author: Alberto Santamaria-Pang <[email protected]> Date: Sun Jan 26 02:15:39 2025 +0000 WIP: Cleaner version of en-to-end evaluation commit 4ef9c86 Author: Alberto Santamaria-Pang <[email protected]> Date: Sun Jan 26 02:14:33 2025 +0000 ADD: Utility for FAISS indexing, evaluation and display retrieved images commit 6e0e73f Author: Ivan Tarapov <[email protected]> Date: Fri Jan 24 23:12:40 2025 -0800 updating data url commit 396f24a Author: Ivan Tarapov <[email protected]> Date: Fri Jan 24 23:06:01 2025 -0800 Fixing formatting commit f700fa9 Author: Ivan Tarapov <[email protected]> Date: Fri Jan 24 22:57:27 2025 -0800 Updated readme for better language and to include an index of all notebooks. commit 5c45b77 Author: Ivan Tarapov <[email protected]> Date: Fri Jan 24 18:03:05 2025 -0800 Initial commit of JNB index in Readme commit 3863ff8 Author: Alberto Santamaria-Pang <[email protected]> Date: Thu Jan 23 23:30:06 2025 +0000 wip -- added evaluation commit 72c7ddd Merge: df1ae22 3ab9311 Author: Jameson <[email protected]> Date: Thu Jan 23 11:30:59 2025 -0800 Merge pull request #31 from microsoft/jameson/basic-ci-cd add basic ci/cd commit 3ab9311 Author: Jameson Merkow <[email protected]> Date: Thu Jan 23 16:54:33 2025 +0000 remove Python 3.12 from CI workflow and update test_basic.py imports commit 8d7e8ec Author: Jameson Merkow <[email protected]> Date: Thu Jan 23 16:39:10 2025 +0000 fix toml commit 58aa38a Author: Jameson Merkow <[email protected]> Date: Thu Jan 23 16:35:59 2025 +0000 add basic ci/cd commit c21f178 Author: Alberto Santamaria-Pang <[email protected]> Date: Thu Jan 23 06:52:25 2025 +0000 wip commit 2f3462c Author: Alberto Santamaria-Pang <[email protected]> Date: Thu Jan 23 06:51:35 2025 +0000 wip commit e2f4910 Author: Alberto Santamaria-Pang <[email protected]> Date: Thu Jan 23 06:40:37 2025 +0000 wip commit 4729199 Author: leeh43 <[email protected]> Date: Wed Jan 22 19:35:14 2025 +0000 Black utils.py commit 55c6a93 Author: leeh43 <[email protected]> Date: Wed Jan 22 19:31:22 2025 +0000 move function into utilis.py and integrate comments from Jameson commit df1ae22 Merge: bd21731 1ed731f Author: Jameson <[email protected]> Date: Tue Jan 21 20:47:07 2025 -0800 Merge pull request #29 from microsoft/jameson/mip-hf add functions for JSON decoding and image plotting; remove mip_utils.py commit 1ed731f Author: Jameson Merkow <[email protected]> Date: Wed Jan 22 04:44:52 2025 +0000 add functions for JSON decoding and image plotting; remove mip_utils.py commit bd21731 Merge: bf41fa8 7d856b6 Author: Alberto Santamaria-Pang <[email protected]> Date: Tue Jan 21 19:22:28 2025 -0800 Merge pull request #28 from microsoft/peter/add_cpu_faiss Remove faiss in gpu version, added cpu version commit 7d856b6 Author: leeh43 <[email protected]> Date: Wed Jan 22 03:02:10 2025 +0000 remove faiss in gpu version, added cpu version commit bf41fa8 Merge: 7c0fe78 4872b98 Author: Alberto Santamaria-Pang <[email protected]> Date: Fri Jan 17 15:41:56 2025 -0800 Merge pull request #27 from microsoft/peter/add_search_module_to_toolkit Add generic search module to healthcareai_toolkit commit 7c0fe78 Merge: 22c18d6 dae0ac4 Author: Jameson <[email protected]> Date: Fri Jan 17 15:05:00 2025 -0800 Merge pull request #20 from microsoft/peter/add_client_radpath Fix environment issues & Add GigaPath Client in RadPath demo commit dae0ac4 Author: leeh43 <[email protected]> Date: Fri Jan 17 22:45:53 2025 +0000 add comments to state that step 2.1 is optional commit 4872b98 Author: leeh43 <[email protected]> Date: Fri Jan 17 22:16:14 2025 +0000 minor fix on blacking files commit 3fa448a Author: leeh43 <[email protected]> Date: Fri Jan 17 22:13:14 2025 +0000 Add generic search module to healthcareai_toolkit commit ea11af7 Author: leeh43 <[email protected]> Date: Tue Jan 14 03:05:50 2025 +0000 minor fix on adapter naming commit 82f0d7d Author: leeh43 <[email protected]> Date: Tue Jan 14 00:26:10 2025 +0000 Removed the training output progress commit 8c0a81f Author: leeh43 <[email protected]> Date: Wed Jan 8 23:55:10 2025 +0000 remove path from the cell output commit 9f06e2e Author: leeh43 <[email protected]> Date: Wed Jan 8 20:41:18 2025 +0000 Convert grade into integers for visualization commit 1e3722d Author: leeh43 <[email protected]> Date: Wed Jan 8 00:59:34 2025 +0000 Black both files and notebooks commit cd87a58 Merge: 530b56f b66f7fa Author: leeh43 <[email protected]> Date: Wed Jan 8 00:54:02 2025 +0000 Merge branch 'peter/add_client_radpath' of https://github.com/microsoft/healthcareai-examples-pr into peter/add_client_radpath commit 530b56f Author: leeh43 <[email protected]> Date: Wed Jan 8 00:47:39 2025 +0000 Integrated Jameson's comments and refine visualizations commit 22c18d6 Merge: b3164e1 d0504c5 Author: Alberto Santamaria-Pang <[email protected]> Date: Wed Dec 18 12:11:03 2024 -0800 Merge pull request #23 from microsoft/mablonde/fix-mip-deploy Adding initial_delay + missing file commit d0504c5 Author: Matthias Blondeel <[email protected]> Date: Wed Dec 18 12:00:58 2024 -0800 Fixing formatting by using black commit 89daa80 Author: Matthias Blondeel <[email protected]> Date: Tue Dec 17 17:03:04 2024 -0800 Adding initial_delay + missing file commit b3164e1 Merge: 7695aab 59b3f1d Author: Jameson <[email protected]> Date: Mon Dec 16 15:44:29 2024 -0800 Merge pull request #22 from microsoft/itarapov/contrib_updates Updated some rules for better readability of the notebooks commit 59b3f1d Author: Ivan Tarapov <[email protected]> Date: Mon Dec 16 15:42:04 2024 -0800 Updated some rules for better readability of the notebooks commit 7695aab Merge: 6a4e2b2 86f69a7 Author: Jameson <[email protected]> Date: Mon Dec 16 14:02:50 2024 -0800 Merge pull request #21 from microsoft/jameson/readme-updates add code quality standards and disclaimers commit b66f7fa Author: Jameson Merkow <[email protected]> Date: Mon Dec 16 19:19:13 2024 +0000 organize imports commit 2693d22 Merge: bfb94a1 6a4e2b2 Author: Jameson Merkow <[email protected]> Date: Mon Dec 16 19:16:08 2024 +0000 Merge remote-tracking branch 'origin/main' into peter/add_client_radpath commit 86f69a7 Author: Jameson Merkow <[email protected]> Date: Mon Dec 16 19:07:32 2024 +0000 add code quality standards and disclaimers commit bfb94a1 Author: leeh43 <[email protected]> Date: Wed Dec 11 21:54:14 2024 +0000 minor fix and added packages to pyproject.toml commit 2f46831 Author: leeh43 <[email protected]> Date: Wed Dec 11 19:36:38 2024 +0000 Added GigaPath Client into RadPath JN commit 2ea62ca Author: leeh43 <[email protected]> Date: Tue Dec 3 18:07:00 2024 +0000 black files commit 41dc57b Author: leeh43 <[email protected]> Date: Tue Dec 3 18:04:22 2024 +0000 fix issues in RadPath demo commit 6a4e2b2 Merge: 139459d c790e2e Author: leeh43 <[email protected]> Date: Sat Nov 30 16:23:11 2024 -0800 Merge pull request #14 from microsoft/peter/add_client_radpath add medimageinsight client for radpath tutorial commit c790e2e Author: leeh43 <[email protected]> Date: Sat Nov 30 23:04:31 2024 +0000 minor fix on endpoint_json local path in the markdown commit 38b1eed Author: leeh43 <[email protected]> Date: Sat Nov 30 22:47:42 2024 +0000 minor fix on notebook, and transfer sample images and endpoint file to the data blob commit 139459d Merge: 5f2d67d 265eccb Author: Jameson Merkow <[email protected]> Date: Sat Nov 30 17:08:40 2024 +0000 Merge remote-tracking branch 'public-rep/main' commit 5f2d67d Merge: 87cf50c 647ad92 Author: Jameson Merkow <[email protected]> Date: Sat Nov 30 16:30:03 2024 +0000 Merge branch 'pub/initial-code' commit 87cf50c Merge: 3d10251 07ec235 Author: Jameson <[email protected]> Date: Fri Nov 29 09:14:47 2024 -0800 Merge pull request #17 from microsoft/jameson/more-oss-changes More OSS changes commit 07ec235 Author: Jameson Merkow <[email protected]> Date: Fri Nov 29 17:11:44 2024 +0000 check and fix links commit 03c2465 Author: Jameson Merkow <[email protected]> Date: Fri Nov 29 15:59:42 2024 +0000 code clean up commit 276343c Author: leeh43 <[email protected]> Date: Fri Nov 29 00:47:46 2024 +0000 Convert all data paths and black jupyter notebooks commit f1a184d Merge: 7fabc29 3d10251 Author: leeh43 <[email protected]> Date: Thu Nov 28 23:52:39 2024 +0000 Merge remote-tracking branch 'origin/main' into peter/add_client_radpath commit 3d10251 Author: leeh43 <[email protected]> Date: Thu Nov 28 04:57:47 2024 +0000 removed data in radpath for open source requirement commit 7fabc29 Author: leeh43 <[email protected]> Date: Thu Nov 28 01:04:01 2024 +0000 Minor fix on KM survival curve and removed wrong files location commit 0adb79c Author: leeh43 <[email protected]> Date: Wed Nov 27 22:28:47 2024 +0000 run black on python script and minor fix on notebook commit a2d089a Author: leeh43 <[email protected]> Date: Wed Nov 27 22:18:09 2024 +0000 Adapted the MI2 client and refine the markdown commit 5a54f0c Merge: 166e048 9c7cfa6 Author: Jameson Merkow <[email protected]> Date: Wed Nov 27 16:38:09 2024 +0000 Merge remote-tracking branch 'origin/main' into jameson/more-oss-changes commit 9c7cfa6 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed Nov 27 08:34:37 2024 -0800 Bump tornado from 6.4.1 to 6.4.2 in /package (#9) Bumps [tornado](https://github.com/tornadoweb/tornado) from 6.4.1 to 6.4.2. - [Changelog](https://github.com/tornadoweb/tornado/blob/v6.4.2/docs/releases.rst) - [Commits](tornadoweb/tornado@v6.4.1...v6.4.2) --- updated-dependencies: - dependency-name: tornado dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> commit 9da5bcd Merge: 735ed05 9363a9c Author: Jameson <[email protected]> Date: Wed Nov 27 08:34:02 2024 -0800 Merge pull request #10 from microsoft/dependabot/pip/package/scikit-learn-1.5.0 Bump scikit-learn from 1.3.2 to 1.5.0 in /package commit 166e048 Author: Jameson Merkow <[email protected]> Date: Wed Nov 27 16:27:11 2024 +0000 update outlier detection demo intro for clarity commit 53a75ac Author: Jameson Merkow <[email protected]> Date: Wed Nov 27 16:26:34 2024 +0000 lint and gitignore clean up commit 735ed05 Author: Jameson Merkow <[email protected]> Date: Tue Nov 26 21:35:47 2024 +0000 fix: remove endpoint uri commit 5ca750b Merge: b49721a 07f1ca0 Author: Jameson <[email protected]> Date: Tue Nov 26 09:48:52 2024 -0800 Merge pull request #12 from microsoft/jameson/oss-updates Updates for OSS release commit 07f1ca0 Author: Jameson Merkow <[email protected]> Date: Tue Nov 26 17:46:10 2024 +0000 update .gitignore to exclude CSV/JSON files commit 4c3788b Author: Jameson Merkow <[email protected]> Date: Tue Nov 26 17:28:52 2024 +0000 re-run adapter-training commit 2993259 Author: Jameson Merkow <[email protected]> Date: Tue Nov 26 16:57:09 2024 +0000 improve logging and endpoint handling commit 8813d64 Merge: 2ff51fd b49721a Author: Jameson Merkow <[email protected]> Date: Tue Nov 26 16:46:01 2024 +0000 Merge remote-tracking branch 'origin/main' into jameson/oss-updates commit 2ff51fd Author: Jameson Merkow <[email protected]> Date: Tue Nov 26 15:03:37 2024 +0000 hide path leak through warning commit e744d8f Author: leeh43 <[email protected]> Date: Tue Nov 26 05:48:47 2024 +0000 delete sensitive path of the data commit 96221d0 Author: leeh43 <[email protected]> Date: Tue Nov 26 05:43:35 2024 +0000 added a copy of notebook of using client for mi2 commit b49721a Merge: a1faaf2 be012ca Author: leeh43 <[email protected]> Date: Mon Nov 25 14:27:56 2024 -0800 Merge pull request #2 from microsoft/peter/radpath_survival_demo Adding RadPath-Demo commit be012ca Author: leeh43 <[email protected]> Date: Mon Nov 25 22:06:37 2024 +0000 Added vertical flipping to the radiology image visualization commit 3e7fd3f Author: leeh43 <[email protected]> Date: Mon Nov 25 21:43:18 2024 +0000 Minor changes with Alberto's comment commit f313441 Author: Jameson Merkow <[email protected]> Date: Mon Nov 25 20:46:29 2024 +0000 formatting commit 85d383d Author: Jameson Merkow <[email protected]> Date: Mon Nov 25 19:22:52 2024 +0000 add final remarks commit 7cd1bb7 Author: Jameson Merkow <[email protected]> Date: Mon Nov 25 19:22:37 2024 +0000 remove modality notebook commit 77fdf48 Author: Jameson Merkow <[email protected]> Date: Mon Nov 25 18:29:10 2024 +0000 add settings file to remove paths and URIs from notebooks commit e3a3c95 Author: Jameson Merkow <[email protected]> Date: Sun Nov 24 17:05:39 2024 +0000 remove size check from qc commit e7a3649 Merge: 276d689 a1faaf2 Author: Jameson Merkow <[email protected]> Date: Sun Nov 24 17:03:30 2024 +0000 Merge remote-tracking branch 'origin/main' into jameson/oss-updates commit a1faaf2 Merge: fa93fed e9cdeac Author: Jameson <[email protected]> Date: Sun Nov 24 09:02:34 2024 -0800 Merge pull request #11 from microsoft/jameson/fixup-outlier-detection add details to outlier detection commit 276d689 Author: Jameson Merkow <[email protected]> Date: Sun Nov 24 16:59:49 2024 +0000 fix cxr-deploy notebook commit 88858c2 Author: Jameson Merkow <[email protected]> Date: Sun Nov 24 16:50:16 2024 +0000 add copyright notices and license information commit 526ad42 Author: Jameson Merkow <[email protected]> Date: Sun Nov 24 16:42:53 2024 +0000 add CODEOWNERS and quality check files; update README commit 3781dbe Author: Jameson Merkow <[email protected]> Date: Sun Nov 24 16:17:21 2024 +0000 add docs in prep for OSS commit 06c399e Author: leeh43 <[email protected]> Date: Sat Nov 23 07:37:02 2024 +0000 Completed an initial draft for rad_path demo commit e9cdeac Author: Jameson Merkow <[email protected]> Date: Sat Nov 23 01:27:06 2024 +0000 add details to outlier detection commit 9363a9c Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri Nov 22 23:47:48 2024 +0000 Bump scikit-learn from 1.3.2 to 1.5.0 in /package Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.3.2 to 1.5.0. - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](scikit-learn/scikit-learn@1.3.2...1.5.0) --- updated-dependencies: - dependency-name: scikit-learn dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> commit fa93fed Merge: a1f6c7a 030a3e7 Author: Jameson <[email protected]> Date: Fri Nov 22 15:44:43 2024 -0800 Merge pull request #7 from microsoft/jameson/add-outlier-detection-demo add outlier detection demo notebook commit 030a3e7 Author: Jameson Merkow <[email protected]> Date: Fri Nov 22 23:43:57 2024 +0000 update project metadata and dependencies in pyproject.toml commit fe13d91 Author: Jameson Merkow <[email protected]> Date: Fri Nov 22 23:26:21 2024 +0000 fixes to outlier detection demo commit cbe4dab Merge: fa458a4 a1f6c7a Author: Jameson Merkow <[email protected]> Date: Fri Nov 22 23:25:29 2024 +0000 Merge remote-tracking branch 'origin/main' into jameson/add-outlier-detection-demo commit a1f6c7a Merge: 010ff8a 534bcb0 Author: Jameson <[email protected]> Date: Fri Nov 22 12:25:26 2024 -0800 Merge pull request #8 from microsoft/jameson/patch-1 fix create_submitter commit 534bcb0 Author: Jameson <[email protected]> Date: Fri Nov 22 12:25:15 2024 -0800 fix create_submitter commit fa458a4 Author: Jameson Merkow <[email protected]> Date: Thu Nov 21 23:07:07 2024 +0000 minor fixes commit ce0306f Author: Jameson Merkow <[email protected]> Date: Thu Nov 21 22:58:17 2024 +0000 add outlier-detection demo diagram commit 2bdcf53 Author: Jameson Merkow <[email protected]> Date: Thu Nov 21 20:37:26 2024 +0000 add outlier detection demo notebook commit 010ff8a Merge: 2fb1187 237c076 Author: Jameson <[email protected]> Date: Tue Nov 19 10:31:43 2024 -0800 Merge pull request #3 from microsoft/jameson/add-package3 Refactor helper code from notebooks into healthcareai_toolkit package commit 237c076 Author: Jameson Merkow <[email protected]> Date: Tue Nov 19 18:23:16 2024 +0000 refactor helper code from notebooks into healthcareai_toolkit package * add clients for each endpoint to ease usage. * functionality includes easy image reading and normalization, post processing and retry logic * added batch submitter to make processing large amounts of data easier commit 98a6f0a Author: leeh43 <[email protected]> Date: Tue Nov 19 00:53:22 2024 +0000 No Production, provide initial dummy model for unblocking demo pipeline commit 9576f9a Author: leeh43 <[email protected]> Date: Fri Nov 15 19:26:23 2024 +0000 Drafted the complete task 1 from data analysis to endpoint deployment commit a95c1b7 Author: leeh43 <[email protected]> Date: Thu Nov 14 21:23:01 2024 +0000 Committed the draft of task 1 commit 2fb1187 Author: Jameson Merkow <[email protected]> Date: Mon Oct 28 20:04:27 2024 +0000 remove .amltmp files commit b43f842 Author: Jameson Merkow <[email protected]> Date: Mon Oct 28 19:03:07 2024 +0000 add azureml examples
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Bumps notebook from 7.0.7 to 7.2.2.
Release notes
Sourced from notebook's releases.
... (truncated)
Changelog
Sourced from notebook's changelog.
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Commits
d1d232bPublish 7.2.20426a89Upgrade JupyterLab dependencies to v4.2.5 (#7447)3542421Publish 7.2.1e881745Backport PR #7392: Remove pseudoelement obstructing the cell collapser (#7393)30587b8Publish 7.2.031bf294Add user facing changelog for 7.2 (#7372)08fe5c5Update@jupyterlab/galata(#7361)7891117Update config.yml (#7363)a1e25b9Publish 7.2.0rc1f5d8aeaDefault to thefullwindowing mode (#7321)You can trigger a rebase of this PR by commenting
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