set run-tests only if condition is true #355
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name: Create a pipeline and test it | |
on: | |
push: | |
branches: | |
- dev | |
pull_request: | |
release: | |
types: [published] | |
# Cancel if a newer run is started | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
env: | |
NXF_ANSI_LOG: false | |
jobs: | |
RunTestWorkflow: | |
runs-on: ubuntu-latest | |
env: | |
NXF_ANSI_LOG: false | |
strategy: | |
matrix: | |
NXF_VER: | |
- "23.04.0" | |
- "latest-everything" | |
steps: | |
- uses: actions/checkout@v4 | |
name: Check out source-code repository | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.12 | |
- name: Install python dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install . | |
- name: Install Nextflow | |
uses: nf-core/setup-nextflow@v1 | |
with: | |
version: ${{ matrix.NXF_VER }} | |
- name: Run nf-core/tools | |
run: | | |
mkdir create-test-wf && cd create-test-wf | |
export NXF_WORK=$(pwd) | |
nf-core --log-file log.txt create -n testpipeline -d "This pipeline is for testing" -a "Testing McTestface" --plain | |
nextflow run nf-core-testpipeline -profile test,docker --outdir ./results | |
- name: Upload log file artifact | |
if: ${{ always() }} | |
uses: actions/upload-artifact@v3 | |
with: | |
name: nf-core-log-file | |
path: create-test-wf/log.txt |