c'mon, let's do it.

Gemfile_old

@@ -0,0 +1,5 @@
+source "https://rubygems.org"
+gem "github-pages", group: :jekyll_plugins
+
+# (plus any other gems you need)
+gemspec

_config.yml

@@ -12,22 +12,44 @@
 
 # theme                  : "minimal-mistakes-jekyll"
 # remote_theme           : "mmistakes/minimal-mistakes"
+# ────────────────────────────────────────────────────────────────────────────
+# Tell Jekyll to use Minimal Mistakes
+# Tell Jekyll which theme to load
+# testing_flag: "MY_CONFIG_IS_LOADED"
+remote_theme: "mmistakes/minimal-mistakes"
+
+plugins:
+  - jekyll-remote-theme
+  - jekyll-paginate
+  - jekyll-sitemap
+  - jekyll-gist
+  - jekyll-feed
+  #- jekyll-include-cache
+
+# (near where you put your old custom.html)
+head:
+  include:
+    - custom_favicons.html
+
+# (Optional) Run in safe mode, like GitHub Pages
+safe: true
+# ────────────────────────────────────────────────────────────────────────────
 minimal_mistakes_skin    : "default" # "air", "aqua", "contrast", "dark", "dirt", "neon", "mint", "plum", "sunrise"
 
 # Site Settings
 locale                   : "en-US"
 rtl                      : # true, false (default) # turns direction of the page into right to left for RTL languages
-title                    : "Site Title"
+title                    : "Giulio Ruffini's Research"
 title_separator          : "-"
 subtitle                 : # site tagline that appears below site title in masthead
-name                     : "Your Name"
-description              : "An amazing website."
-url                      : # the base hostname & protocol for your site e.g. "https://mmistakes.github.io"
+name                     : "Giulio Ruffini"
+description              : "Computational Neuroscientist | Consciousness Researcher | Founder of Neuroelectrics & Starlab"
+url                      : "https://giulioruffini.github.io" # the base hostname & protocol for your site e.g. "https://mmistakes.github.io"
 baseurl                  : # the subpath of your site, e.g. "/blog"
 repository               : # GitHub username/repo-name e.g. "mmistakes/minimal-mistakes"
-teaser                   : # path of fallback teaser image, e.g. "/assets/images/500x300.png"
+teaser                   : "/assets/images/GIULIO.jpg" # path of fallback teaser image, e.g. "/assets/images/500x300.png"
 logo                     : # path of logo image to display in the masthead, e.g. "/assets/images/88x88.png"
-masthead_title           : # overrides the website title displayed in the masthead, use " " for no title
+masthead_title           : "Giulio Ruffini's Research" # overrides the website title displayed in the masthead, use " " for no title
 breadcrumbs              : # true, false (default)
 words_per_minute         : 200
 enable_copy_code_button  : # true, false (default)
@@ -67,20 +89,20 @@ reCaptcha:
   secret                 :
 atom_feed:
   path                   : # blank (default) uses feed.xml
-  hide                   : # true, false (default)
-search                   : # true, false (default)
-search_full_content      : # true, false (default)
-search_provider          : # lunr (default), algolia, google
+  hide                   : true # true, false (default)
+search                   : true # true, false (default)
+search_full_content      : true # true, false (default)
+search_provider          : google # lunr (default), algolia, google
 lunr:
-  search_within_pages    : # true, false (default)
+  search_within_pages    : true # true, false (default)
 algolia:
   application_id         : # YOUR_APPLICATION_ID
   index_name             : # YOUR_INDEX_NAME
   search_only_api_key    : # YOUR_SEARCH_ONLY_API_KEY
   powered_by             : # true (default), false
 google:
-  search_engine_id       : # YOUR_SEARCH_ENGINE_ID
-  instant_search         : # false (default), true
+  search_engine_id       : e398c45eecd854859 # YOUR_SEARCH_ENGINE_ID
+  instant_search         : true # false (default), true
 # SEO Related
 google_site_verification :
 bing_site_verification   :
@@ -90,7 +112,7 @@ baidu_site_verification  :
 
 # Social Sharing
 twitter:
-  username               :
+  username               : "ruffini"
 facebook:
   username               :
   app_id                 :
@@ -113,52 +135,64 @@ analytics:
 
 # Site Author
 author:
-  name             : "Your Name"
-  avatar           : # path of avatar image, e.g. "/assets/images/bio-photo.jpg"
-  bio              : "I am an **amazing** person."
-  location         : "Somewhere"
-  email            :
+  name             : "Giulio Ruffini"
+  avatar           : "/assets/images/GIULIO.jpg"
+  bio              : "Theoretical physicist, computational /algorithmic neuroscientist"
+  location         : "Barcelona"
+  email            : "[email protected]"
   links:
-    - label: "Email"
-      icon: "fas fa-fw fa-envelope-square"
-      # url: "mailto:your.name@email.com"
-    - label: "Website"
-      icon: "fas fa-fw fa-link"
+    #- label: "Email"
+    #  icon: "fas fa-fw fa-envelope-square"
+    #  url: "mailto:giulio.ruffini@mac.com"
+  # - label: "Website"
+  #    icon: "fas fa-fw fa-link"
       # url: "https://your-website.com"
-    - label: "Twitter"
+    - label: "Bluesky"
+      icon: "fas fa-fw fa-link"
+      url: "https://bsky.app/profile/did:plc:37bwtlke7dplqitxkzqule6e"
+    - label: "Twitter/X"
       icon: "fab fa-fw fa-twitter-square"
-      # url: "https://twitter.com/"
-    - label: "Facebook"
-      icon: "fab fa-fw fa-facebook-square"
+      url: "https://x.com/ruffini"
+    #- label: "Facebook"
+    #  icon: "fab fa-fw fa-facebook-square"
       # url: "https://facebook.com/"
     - label: "GitHub"
       icon: "fab fa-fw fa-github"
-      # url: "https://github.com/"
-    - label: "Instagram"
-      icon: "fab fa-fw fa-instagram"
-      # url: "https://instagram.com/"
-
+      url: "https://github.com/giulioruffini"
+    - label: "Substack"
+      icon: "fab fa-fw fa-link"
+      url: "https://platoniapirate.substack.com"
+      
 # Site Footer
 footer:
   links:
-    - label: "Twitter"
+    - label: "Email"
+      icon: "fas fa-fw fa-envelope-square"
+      url: "mailto:[email protected]"
+  # - label: "Website"
+  #    icon: "fas fa-fw fa-link"
+      # url: "https://your-website.com"
+    - label: "Bluesky"
+      icon: "fas fa-fw fa-link"
+      url: "https://bsky.app/profile/did:plc:37bwtlke7dplqitxkzqule6e"
+    - label: "Twitter/X"
       icon: "fab fa-fw fa-twitter-square"
-      # url:
-    - label: "Facebook"
-      icon: "fab fa-fw fa-facebook-square"
-      # url:
+      url: "https://x.com/ruffini"
+    #- label: "Facebook"
+    #  icon: "fab fa-fw fa-facebook-square"
+      # url: "https://facebook.com/"
     - label: "GitHub"
       icon: "fab fa-fw fa-github"
-      # url:
-    - label: "GitLab"
-      icon: "fab fa-fw fa-gitlab"
-      # url:
-    - label: "Bitbucket"
-      icon: "fab fa-fw fa-bitbucket"
-      # url:
+      url: "https://github.com/giulioruffini"
     - label: "Instagram"
       icon: "fab fa-fw fa-instagram"
-      # url:
+      url: "https://www.instagram.com/k.and.ai"
+    - label: "Substack"
+      icon: "fab fa-fw fa-link"
+      url: "https://platoniapirate.substack.com"
+    - label: "Spotify"
+      icon: "fab fa-fw fa-spotify"
+      url: "https://open.spotify.com/artist/4zohEvcKbgPdWmLHSlLRWo?si=7opSqZvCTN2HyZwJhNGL5A"
 
 
 # Reading Files
@@ -218,7 +252,20 @@ kramdown:
   toc_levels: 1..6
   smart_quotes: lsquo,rsquo,ldquo,rdquo
   enable_coderay: false
+  link_attrs:
+    target: "_blank"
+    rel: "noopener"
 
+# ────────────────────────────────────────────────────────────────────────────
+# make all external links open in a new tab with noopener for security
+external_links:
+  target: "_blank"
+  rel: "noopener"
+# ────────────────────────────────────────────────────────────────────────────
+
+# ────────────────────────────────────────────────────────────────────────────
+favicon: "/assets/images/Kfav.png"
+# ────────────────────────────────────────────────────────────────────────────
 
 # Sass/SCSS
 sass:
@@ -257,22 +304,6 @@ pagination:
     after: 2
 
 
-# Plugins (previously gems:)
-plugins:
-  - jekyll-paginate
-  - jekyll-sitemap
-  - jekyll-gist
-  - jekyll-feed
-  - jekyll-include-cache
-
-# mimic GitHub Pages with --safe
-whitelist:
-  - jekyll-paginate
-  - jekyll-sitemap
-  - jekyll-gist
-  - jekyll-feed
-  - jekyll-include-cache
-
 
 # Archives
 #  Type

_data/navigation.yml

@@ -1,12 +1,18 @@
 # main links
 main:
-  - title: "Quick-Start Guide"
-    url: https://mmistakes.github.io/minimal-mistakes/docs/quick-start-guide/
+  - title: "Kolmogorov Theory"
+    url: /kt/
+  - title: "Computational Neuroscience"
+    url: /lanmm/  
+  - title: "Brain Stimulation"
+    url: /tES/
+
+
   # - title: "About"
   #   url: https://mmistakes.github.io/minimal-mistakes/about/
   # - title: "Sample Posts"
   #   url: /year-archive/
   # - title: "Sample Collections"
   #   url: /collection-archive/
   # - title: "Sitemap"
-  #   url: /sitemap/
+  #   url: /sitemap/

_includes/head/custom.html

@@ -1,5 +1,15 @@
-<!-- start custom head snippets -->
+{% if site.favicon %}
+<link rel="icon" type="image/png" href="{{ site.favicon | relative_url }}">
+<link rel="shortcut icon" href="{{ site.favicon | relative_url }}" type="image/png">
+{% endif %}
 
-<!-- insert favicons. use https://realfavicongenerator.net/ -->
-
-<!-- end custom head snippets -->
+{% comment %}Favicon suite from favicon.io{% endcomment %}
+<link rel="apple-touch-icon"      sizes="180x180" href="{{ '/assets/images/favicon_io/apple-touch-icon.png' | relative_url }}">
+<link rel="icon"                  type="image/png" sizes="32x32"  href="{{ '/assets/images/favicon_io/favicon-32x32.png'  | relative_url }}">
+<link rel="icon"                  type="image/png" sizes="16x16"  href="{{ '/assets/images/favicon_io/favicon-16x16.png'  | relative_url }}">
+<link rel="manifest"                                  href="{{ '/assets/images/favicon_io/site.webmanifest'   | relative_url }}">
+<link rel="mask-icon"           href="{{ '/assets/images/favicon_io/safari-pinned-tab.svg' | relative_url }}" color="#5bbad5">
+<link rel="shortcut icon"       href="{{ '/assets/images/favicon_io/favicon.ico'       | relative_url }}">
+<meta name="msapplication-TileColor" content="#da532c">
+<meta name="msapplication-config"    content="{{ '/assets/images/favicon_io/browserconfig.xml' | relative_url }}">
+<meta name="theme-color"            content="#ffffff">

_includes/head/custom_favicons.html

@@ -0,0 +1,20 @@
+{%- comment -%} Standard favicons from favicon.io {%- endcomment -%}
+
+<link rel="apple-touch-icon"      sizes="180x180"
+      href="{{ '/assets/images/favicon_io/apple-touch-icon.png' | relative_url }}">
+<link rel="icon"                  type="image/png" sizes="32x32"
+      href="{{ '/assets/images/favicon_io/favicon-32x32.png'  | relative_url }}">
+<link rel="icon"                  type="image/png" sizes="16x16"
+      href="{{ '/assets/images/favicon_io/favicon-16x16.png'  | relative_url }}">
+<link rel="manifest"
+      href="{{ '/assets/images/favicon_io/site.webmanifest'   | relative_url }}">
+<link rel="mask-icon"
+      href="{{ '/assets/images/favicon_io/safari-pinned-tab.svg' | relative_url }}"
+      color="#5bbad5">
+<link rel="shortcut icon"
+      href="{{ '/assets/images/favicon_io/favicon.ico'       | relative_url }}">
+
+<meta name="msapplication-TileColor" content="#da532c">
+<meta name="msapplication-config"
+      content="{{ '/assets/images/favicon_io/browserconfig.xml' | relative_url }}">
+<meta name="theme-color" content="#ffffff">

_includes/scripts.html

@@ -10,11 +10,11 @@
   {%- assign search_provider = site.search_provider | default: "lunr" -%}
   {%- case search_provider -%}
     {%- when "lunr" -%}
-      {% include_cached search/lunr-search-scripts.html %}
+      {% include search/lunr-search-scripts.html %}
     {%- when "google" -%}
-      {% include_cached search/google-search-scripts.html %}
+      {% include search/google-search-scripts.html %}
     {%- when "algolia" -%}
-      {% include_cached search/algolia-search-scripts.html %}
+      {% include search/algolia-search-scripts.html %}
   {%- endcase -%}
 {% endif %}
 

_layouts/default.html

@@ -10,24 +10,29 @@
   </head>
 
   <body class="layout--{{ page.layout | default: layout.layout }}{% if page.classes or layout.classes %}{{ page.classes | default: layout.classes | join: ' ' | prepend: ' ' }}{% endif %}" dir="{% if site.rtl %}rtl{% else %}ltr{% endif %}">
-    {% include_cached skip-links.html %}
-    {% include_cached masthead.html %}
+    {% include skip-links.html %}
+    {% include masthead.html %}
 
+<!--     <div style="position:fixed;bottom:0;right:0;padding:4px;
+            background:rgba(0,0,0,0.5);color:white;font-size:12px;">
+  {{ site.testing_flag }}
+</div> -->
+
     <div class="initial-content">
       {{ content }}
       {% include after-content.html %}
     </div>
 
     {% if site.search == true %}
       <div class="search-content">
-        {% include_cached search/search_form.html %}
+        {% include search/search_form.html %}
       </div>
     {% endif %}
 
     <div id="footer" class="page__footer">
       <footer>
         {% include footer/custom.html %}
-        {% include_cached footer.html %}
+        {% include footer.html %}
       </footer>
     </div>
 

assets/images/favicon_io/site.webmanifest

@@ -0,0 +1 @@
+{"name":"","short_name":"","icons":[{"src":"/android-chrome-192x192.png","sizes":"192x192","type":"image/png"},{"src":"/android-chrome-512x512.png","sizes":"512x512","type":"image/png"}],"theme_color":"#ffffff","background_color":"#ffffff","display":"standalone"}

assets/images/readme.md

@@ -0,0 +1 @@
+

assets/images/site.webmanifest

@@ -0,0 +1 @@
+{"name":"","short_name":"","icons":[{"src":"/android-chrome-192x192.png","sizes":"192x192","type":"image/png"},{"src":"/android-chrome-512x512.png","sizes":"512x512","type":"image/png"}],"theme_color":"#ffffff","background_color":"#ffffff","display":"standalone"}

assets/papers/readme.md

@@ -0,0 +1 @@
+

assets/slides/index.md

@@ -0,0 +1,18 @@
+---
+layout: default
+title: "Slides"
+permalink: /slides/
+---
+
+## Available Slides
+
+<ul>
+{% assign dl_files = site.static_files | where_exp: "f", "f.path contains '/assets/slides/'" %}
+{% for f in dl_files %}
+  <li>
+    <a href="{{ f.path | relative_url }}">
+      {{ f.name }}
+    </a>
+  </li>
+{% endfor %}
+</ul>