Add autofix.ci to run stub file generation on pull request #136
Workflow file for this run
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| name: ci | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| on: # yamllint disable-line rule:truthy | |
| pull_request: | |
| push: | |
| branches: [main] | |
| workflow_dispatch: | |
| release: | |
| types: [published] | |
| jobs: | |
| get_commit_message: | |
| name: get commit message | |
| runs-on: ubuntu-latest | |
| outputs: | |
| commit_message: ${{ steps.get_message.outputs.commit_message }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # ensure the correct commit is checked out for PRs or pushes | |
| ref: ${{ github.event.pull_request.head.sha || github.sha }} | |
| fetch-depth: 1 | |
| - run: echo "commit_message=$(git log -1 --pretty=%s)" >> $GITHUB_OUTPUT | |
| id: get_message | |
| cibuildwheel: | |
| needs: get_commit_message | |
| name: build wheels on ${{ matrix.os }} ${{ matrix.arch }} | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 10 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-13, macos-latest] | |
| arch: [native] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - uses: astral-sh/setup-uv@v4 | |
| - uses: pypa/[email protected] | |
| env: | |
| MNE_LSL_LIBLSL_BUILD_UNITTESTS: ${{ (github.event_name != 'pull_request' || contains(needs.get_commit_message.outputs.commit_message, '[liblsl]')) && '1' || '0' }} | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-wheels-${{ matrix.os }}-${{ matrix.arch }}-${{ strategy.job-index }} | |
| path: ./wheelhouse/*.whl | |
| cibuildwheel_emulated: | |
| needs: get_commit_message | |
| if: ${{ github.event_name != 'pull_request' || contains(needs.get_commit_message.outputs.commit_message, '[aarch64]') }} | |
| name: build wheels on ${{ matrix.os }} ${{ matrix.arch }} | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| arch: aarch64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: ${{ matrix.arch }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - uses: pypa/[email protected] | |
| env: | |
| CIBW_ARCHS: ${{ matrix.arch }} | |
| MNE_LSL_LIBLSL_BUILD_UNITTESTS: 0 | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-wheels-${{ matrix.os }}-${{ matrix.arch }}-${{ strategy.job-index }} | |
| path: ./wheelhouse/*.whl | |
| test: | |
| needs: cibuildwheel | |
| name: test wheels on ${{ matrix.os }} - py${{ matrix.python }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-13, macos-latest] | |
| python: ["3.10", "3.13"] | |
| exclude: | |
| - os: macos-13 | |
| python: "3.13" | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: cibw-wheels-${{ matrix.os }}-native-* | |
| merge-multiple: true | |
| path: dist | |
| - run: ls -alt . && ls -alt dist/ | |
| - run: uv pip install mne-lsl[test] --only-binary mne-lsl --find-links dist --pre --quiet --system | |
| - run: mne-lsl sys-info --developer | |
| - uses: ./.github/actions/get-testing-dataset | |
| - name: Run pytest | |
| uses: ./.github/actions/retry-step | |
| with: | |
| command: pytest tests/ --cov=mne_lsl --cov-report=xml --cov-config=pyproject.toml -s | |
| retry_error_codes: "3,127,134,139" | |
| env: | |
| MNE_LSL_LOG_LEVEL: DEBUG | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| test-mne-compat: | |
| needs: cibuildwheel | |
| name: test mne compat ${{ matrix.mne-version }} - py${{ matrix.python }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| mne-version: ["1.4.2", "1.5.0"] | |
| python: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: cibw-wheels-ubuntu-latest-native-* | |
| merge-multiple: true | |
| path: dist | |
| - run: ls -alt . && ls -alt dist/ | |
| - run: | | |
| uv pip install mne-lsl[test] --only-binary mne-lsl --find-links dist --pre --quiet --system | |
| uv pip uninstall numpy mne --quiet --system | |
| uv pip install "numpy<2" --quiet --system | |
| uv pip install mne==${{ matrix.mne-version }} --quiet --system | |
| - run: mne-lsl sys-info --developer | |
| - uses: ./.github/actions/get-testing-dataset | |
| - name: Run pytest | |
| uses: ./.github/actions/retry-step | |
| with: | |
| command: pytest tests/ --cov=mne_lsl --cov-report=xml --cov-config=pyproject.toml -s | |
| retry_error_codes: "3,134,139" | |
| env: | |
| MNE_LSL_LOG_LEVEL: DEBUG | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| test-pip-pre: | |
| needs: cibuildwheel | |
| name: test pip pre-release - py${{ matrix.python }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: ["3.13"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - uses: astral-sh/setup-uv@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: cibw-wheels-ubuntu-latest-native-* | |
| merge-multiple: true | |
| path: dist | |
| - run: ls -alt . && ls -alt dist/ | |
| - run: | | |
| uv pip install mne-lsl[test] --only-binary mne-lsl --find-links dist --pre --quiet --system | |
| uv pip install git+https://github.com/mne-tools/mne-python --upgrade --quiet --system | |
| uv pip install matplotlib --quiet --system | |
| uv pip install matplotlib --upgrade --quiet --system --prerelease allow --only-binary :all: -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --no-deps | |
| uv pip install numpy scipy --upgrade --quiet --system --prerelease allow --only-binary :all: -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple | |
| - run: mne-lsl sys-info --developer | |
| - uses: ./.github/actions/get-testing-dataset | |
| - name: Run pytest | |
| uses: ./.github/actions/retry-step | |
| with: | |
| command: pytest tests/ --cov=mne_lsl --cov-report=xml --cov-config=pyproject.toml -s | |
| retry_error_codes: "3,134,139" | |
| env: | |
| MNE_LSL_LOG_LEVEL: DEBUG | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| test-editable: | |
| name: test editable install | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - uses: astral-sh/setup-uv@v4 | |
| - run: uv pip install -e .[test] --verbose --system | |
| - run: mne-lsl sys-info --developer | |
| - name: Run pytest | |
| uses: ./.github/actions/retry-step | |
| with: | |
| command: pytest tests/ --cov=mne_lsl --cov-report=xml --cov-config=pyproject.toml -s | |
| retry_error_codes: "3,134,139" | |
| env: | |
| MNE_LSL_LOG_LEVEL: DEBUG | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| sdist: | |
| name: create sdist | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - uses: astral-sh/setup-uv@v4 | |
| - run: uv pip install build --upgrade --quiet --system | |
| - run: python -m build --sdist | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-wheels-sdist | |
| path: ./dist/*.tar.gz | |
| check: | |
| # run even if 'cibuildwheel_emulated' is skipped | |
| if: ${{ always() }} | |
| needs: [cibuildwheel, cibuildwheel_emulated, sdist] | |
| name: run twine check | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: cibw-wheels-* | |
| merge-multiple: true | |
| path: dist | |
| - run: ls -alt . && ls -alt dist/ | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - uses: astral-sh/setup-uv@v4 | |
| - run: uv pip install twine --upgrade --quiet --system | |
| - run: twine check --strict dist/* | |
| doc-build: | |
| needs: cibuildwheel | |
| name: build documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: sudo apt update && sudo apt install -y optipng | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - uses: astral-sh/setup-uv@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: cibw-wheels-ubuntu-latest-native-* | |
| merge-multiple: true | |
| path: dist | |
| - run: ls -alt . && ls -alt dist/ | |
| - run: uv pip install mne-lsl[doc] --only-binary mne-lsl --find-links dist --pre --quiet --system | |
| - run: mne-lsl sys-info --developer | |
| - uses: ./.github/actions/get-testing-dataset | |
| with: | |
| sample: "true" | |
| testing: "false" | |
| - uses: ./.github/actions/retry-step | |
| with: | |
| command: "make -C doc html" | |
| retry_error_codes: "2" | |
| command_between_retries: "make -C doc clean" | |
| - run: rm -R ./doc/_build/html/.doctrees | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: doc-dev | |
| path: ./doc/_build/html | |
| doc-deploy-dev: | |
| if: github.event_name == 'push' | |
| needs: doc-build | |
| name: deploy development documentation | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: doc-dev | |
| path: ./doc-dev | |
| - uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| folder: ./doc-dev | |
| target-folder: ./dev | |
| git-config-name: 'github-actions[bot]' | |
| git-config-email: 'github-actions[bot]@users.noreply.github.com' | |
| single-commit: true | |
| force: true | |
| doc-deploy-release: | |
| if: github.event_name == 'release' | |
| needs: doc-build | |
| name: deploy stable documentation | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: gh-pages | |
| fetch-depth: 0 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: doc-dev | |
| path: ./doc-dev | |
| - name: Get previous release tag | |
| run: | | |
| PREVIOUS_RELEASE_TAG=$(git tag --sort=-creatordate | sed "/^$RELEASE_TAG$/d" | sed -n 1p) | |
| if [ -z "$PREVIOUS_RELEASE_TAG" ]; then | |
| echo "No previous release tag found." | |
| exit 1 | |
| fi | |
| echo "Previous release tag: $PREVIOUS_RELEASE_TAG" | |
| echo "PREVIOUS_RELEASE_TAG=$PREVIOUS_RELEASE_TAG" >> $GITHUB_ENV | |
| env: | |
| RELEASE_TAG: ${{ github.event.release.tag_name }} | |
| - name: Move stable to previous release tag | |
| run: | | |
| if [ -d "stable" ]; then | |
| if [ -d "$PREVIOUS_RELEASE_TAG" ]; then | |
| echo "Folder $PREVIOUS_RELEASE_TAG already exists. Exiting." | |
| exit 1 | |
| fi | |
| git mv stable "$PREVIOUS_RELEASE_TAG" | |
| else | |
| echo "No stable folder found." | |
| exit 1 | |
| fi | |
| - run: mv doc-dev stable | |
| - run: rm -rf dev && cp -r stable dev | |
| if: github.event.release.target_commitish == 'main' | |
| - name: Commit and push changes | |
| run: | | |
| git config user.name 'github-actions[bot]' | |
| git config user.email 'github-actions[bot]@users.noreply.github.com' | |
| git add . | |
| git commit -m "update documentation for release ${{ github.event.release.tag_name }}" | |
| git push origin gh-pages | |
| publish: | |
| if: github.event_name == 'release' | |
| needs: [check, test, test-mne-compat, test-pip-pre, test-editable, doc-deploy-release] | |
| name: publish to PyPI | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| permissions: | |
| id-token: write | |
| contents: write | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/mne-lsl | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: cibw-wheels-* | |
| merge-multiple: true | |
| path: dist | |
| - uses: softprops/action-gh-release@v2 | |
| with: | |
| files: dist/* | |
| tag_name: ${{ github.event.release.tag_name }} | |
| - uses: pypa/gh-action-pypi-publish@release/v1 |