FloPy benchmarks #495
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: FloPy benchmarks | |
| on: | |
| schedule: | |
| - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST) | |
| jobs: | |
| benchmark: | |
| name: Benchmarks | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: [ 3.8, 3.9, "3.10", "3.11", "3.12" ] | |
| exclude: | |
| # avoid shutil.copytree infinite recursion bug | |
| # https://github.com/python/cpython/pull/17098 | |
| - python-version: '3.8.0' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| timeout-minutes: 90 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: etc/environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| init-shell: >- | |
| bash | |
| powershell | |
| - name: Install FloPy | |
| run: pip install . | |
| - name: Install Modflow executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Run benchmarks | |
| working-directory: autotest | |
| run: | | |
| mkdir -p .benchmarks | |
| pytest -v --durations=0 --benchmark-only --benchmark-json .benchmarks/${{ matrix.os }}_python${{ matrix.python-version }}.json --keep-failed=.failed | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload failed benchmark artifact | |
| uses: actions/upload-artifact@v3 | |
| if: failure() | |
| with: | |
| name: failed-benchmark-${{ matrix.os }}-${{ matrix.python-version }}-${{ github.run_id }} | |
| path: autotest/.failed/** | |
| - name: Upload benchmark result artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: benchmarks-${{ matrix.os }}-${{ matrix.python-version }}-${{ github.run_id }} | |
| path: autotest/.benchmarks/**/*.json | |
| post_benchmark: | |
| needs: | |
| - benchmark | |
| name: Process benchmark results | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.12 | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install numpy pandas matplotlib seaborn | |
| - name: Download all artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: autotest/.benchmarks | |
| - name: Process benchmark results | |
| run: | | |
| repo="${{ github.repository }}" | |
| path="autotest/.benchmarks" | |
| # list benchmark artifacts | |
| artifact_json=$(gh api -X GET -H "Accept: application/vnd.github+json" /repos/$repo/actions/artifacts) | |
| # get artifact ids and download artifacts | |
| get_artifact_ids=" | |
| import json | |
| import sys | |
| from os import linesep | |
| artifacts = json.load(sys.stdin, strict=False)['artifacts'] | |
| artifacts = [a for a in artifacts if a['name'].startswith('benchmarks-') and a['name'].split('-')[-1].isdigit()] | |
| print(linesep.join([str(a['id']) for a in artifacts])) | |
| " | |
| echo $artifact_json \ | |
| | python -c "$get_artifact_ids" \ | |
| | xargs -I@ bash -c "gh api -H 'Accept: application/vnd.github+json' /repos/$repo/actions/artifacts/@/zip >> $path/@.zip" | |
| # unzip artifacts | |
| zipfiles=( $path/*.zip ) | |
| if (( ${#zipfiles[@]} )); then | |
| unzip -o "$path/*.zip" -d $path | |
| fi | |
| # process benchmarks | |
| python scripts/process_benchmarks.py $path $path | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload benchmark results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: benchmarks-${{ github.run_id }} | |
| path: | | |
| autotest/.benchmarks/*.csv | |
| autotest/.benchmarks/*.png |