prepping for 0.3.8

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for fwdpp 0.3.7.
+# Generated by GNU Autoconf 2.69 for fwdpp 0.3.8.
 #
 # Report bugs to <https://github.com/molpopgen/fwdpp>.
 #
@@ -580,8 +580,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='fwdpp'
 PACKAGE_TARNAME='fwdpp'
-PACKAGE_VERSION='0.3.7'
-PACKAGE_STRING='fwdpp 0.3.7'
+PACKAGE_VERSION='0.3.8'
+PACKAGE_STRING='fwdpp 0.3.8'
 PACKAGE_BUGREPORT='https://github.com/molpopgen/fwdpp'
 PACKAGE_URL=''
 
@@ -1293,7 +1293,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures fwdpp 0.3.7 to adapt to many kinds of systems.
+\`configure' configures fwdpp 0.3.8 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1359,7 +1359,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of fwdpp 0.3.7:";;
+     short | recursive ) echo "Configuration of fwdpp 0.3.8:";;
    esac
   cat <<\_ACEOF
 
@@ -1461,7 +1461,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-fwdpp configure 0.3.7
+fwdpp configure 0.3.8
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -1801,7 +1801,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by fwdpp $as_me 0.3.7, which was
+It was created by fwdpp $as_me 0.3.8, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -2668,7 +2668,7 @@ fi
 
 # Define the identity of the package.
  PACKAGE='fwdpp'
- VERSION='0.3.7'
+ VERSION='0.3.8'
 
 
 cat >>confdefs.h <<_ACEOF
@@ -4445,7 +4445,7 @@ ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
 ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
 ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
 
-ac_config_files="$ac_config_files Makefile fwdpp/Makefile fwdpp/internal/Makefile fwdpp/tags/Makefile fwdpp/sugar/Makefile fwdpp/sugar/singlepop/Makefile fwdpp/sugar/metapop/Makefile fwdpp/sugar/multiloc/Makefile fwdpp/sugar/poptypes/Makefile fwdpp/sugar/gsl/Makefile fwdpp/experimental/Makefile fwdpp/extensions/Makefile examples/Makefile unit/Makefile experimental_examples/Makefile src/Makefile"
+ac_config_files="$ac_config_files Makefile fwdpp/Makefile fwdpp/internal/Makefile fwdpp/tags/Makefile fwdpp/sugar/Makefile fwdpp/sugar/singlepop/Makefile fwdpp/sugar/metapop/Makefile fwdpp/sugar/multiloc/Makefile fwdpp/sugar/poptypes/Makefile fwdpp/sugar/gsl/Makefile fwdpp/experimental/Makefile fwdpp/extensions/Makefile examples/Makefile unit/Makefile experimental_examples/Makefile src/Makefile doc/fwdpp.doxygen"
 
 
 # Check whether --enable-boost was given.
@@ -5917,7 +5917,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by fwdpp $as_me 0.3.7, which was
+This file was extended by fwdpp $as_me 0.3.8, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -5983,7 +5983,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-fwdpp config.status 0.3.7
+fwdpp config.status 0.3.8
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 
@@ -6130,6 +6130,7 @@ do
     "unit/Makefile") CONFIG_FILES="$CONFIG_FILES unit/Makefile" ;;
     "experimental_examples/Makefile") CONFIG_FILES="$CONFIG_FILES experimental_examples/Makefile" ;;
     "src/Makefile") CONFIG_FILES="$CONFIG_FILES src/Makefile" ;;
+    "doc/fwdpp.doxygen") CONFIG_FILES="$CONFIG_FILES doc/fwdpp.doxygen" ;;
 
   *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
   esac

configure.ac

@@ -1,6 +1,6 @@
 AC_PREREQ(2.59)
 
-AC_INIT([fwdpp], [0.3.7], [https://github.com/molpopgen/fwdpp])
+AC_INIT([fwdpp], [0.3.8], [https://github.com/molpopgen/fwdpp])
 AC_CONFIG_SRCDIR([fwdpp/diploid.hh])
 AC_CONFIG_SRCDIR([examples/diploid_ind.cc])
 AC_CONFIG_SRCDIR([experimental_examples/sex_limited_ind.cc])
@@ -19,7 +19,7 @@ AM_MAINTAINER_MODE([disable])
 AX_CXX_COMPILE_STDCXX_11([noext],[mandatory])
 
 AC_LANG(C++)
-AC_CONFIG_FILES([Makefile fwdpp/Makefile fwdpp/internal/Makefile fwdpp/tags/Makefile fwdpp/sugar/Makefile fwdpp/sugar/singlepop/Makefile fwdpp/sugar/metapop/Makefile fwdpp/sugar/multiloc/Makefile fwdpp/sugar/poptypes/Makefile fwdpp/sugar/gsl/Makefile fwdpp/experimental/Makefile fwdpp/extensions/Makefile examples/Makefile unit/Makefile experimental_examples/Makefile src/Makefile])
+AC_CONFIG_FILES([Makefile fwdpp/Makefile fwdpp/internal/Makefile fwdpp/tags/Makefile fwdpp/sugar/Makefile fwdpp/sugar/singlepop/Makefile fwdpp/sugar/metapop/Makefile fwdpp/sugar/multiloc/Makefile fwdpp/sugar/poptypes/Makefile fwdpp/sugar/gsl/Makefile fwdpp/experimental/Makefile fwdpp/extensions/Makefile examples/Makefile unit/Makefile experimental_examples/Makefile src/Makefile doc/fwdpp.doxygen])
 
 dnl AC_ARG_ENABLE([standard],AS_HELP_STRING([--enable-standard],[Disable use of boost containers when compiling examples]),[AC_DEFINE([USE_STANDARD_CONTAINERS],[1],[Prefer containers from namespace std when compiling])])
 AC_ARG_ENABLE([boost],AS_HELP_STRING([--enable-boost],[Enable use of boost containers when compiling examples]),[AC_DEFINE([USE_BOOST_CONTAINERS],[1],[Use containers from namespace boost when compiling])])

doc/fwdpp.doxygen → doc/fwdpp.doxygen.in

@@ -38,7 +38,7 @@ PROJECT_NAME           = fwdpp
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = 0.3.7
+PROJECT_NUMBER         = @PACKAGE_VERSION@
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a

doc/md/RELEASE_NOTES.md

@@ -1,5 +1,10 @@
 # FWDPP RELEASE NOTES
 
+## 0.3.8
+
+* Added some include directives whose omission resulted in failure to compile on clang.
+* Doxygen input file now generated by ./configure.  No more need to manually update the version.
+
 ## 0.3.7
 
 * An declaration of KTfwd::recombine_gametes was fixed to match the implementation