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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 237 53

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 2

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 18 6

Repositories

Showing 10 of 237 repositories
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 61 5 Updated Nov 19, 2024
  • monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    monarch-initiative/monarch-ingest’s past year of commit activity
    Python 15 2 31 1 Updated Nov 19, 2024
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 18 BSD-3-Clause 6 181 (3 issues need help) 9 Updated Nov 18, 2024
  • phenio Public

    An integrated ontology for Phenomics

    monarch-initiative/phenio’s past year of commit activity
    Makefile 6 BSD-3-Clause 0 26 1 Updated Nov 18, 2024
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 223 (1 issue needs help) 16 Updated Nov 18, 2024
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 611 BSD-3-Clause 77 59 9 Updated Nov 18, 2024
  • monarch-documentation Public

    Technical documentation for all Monarch applications, packages, services and related projects.

    monarch-initiative/monarch-documentation’s past year of commit activity
    Python 6 GPL-3.0 0 19 2 Updated Nov 18, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 5 MIT 1 24 5 Updated Nov 18, 2024
  • pheval.llm Public

    Analysis of LLMs for Clinical Observations

    monarch-initiative/pheval.llm’s past year of commit activity
    Jupyter Notebook 5 BSD-3-Clause 0 6 2 Updated Nov 18, 2024
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 15 BSD-3-Clause 4 16 0 Updated Nov 18, 2024
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