neoplasm.yaml

pattern_name: neoplasm

pattern_iri: http://purl.obolibrary.org/obo/mondo/patterns/neoplasm.yaml

description: '

  Neoplasms are benign or malignant tissue growths resulting from uncontrolled cell
  proliferation cell types.

  This is a design pattern for classes representing neoplasms based on their location.
  This may be the site of origin, but it can also represent a secondary site for malignant
  neoplasms that have metastasized.

  We use the generic ''disease has location'' relation, which generalized over primary
  and secondary sites.

  Note that tumor is typically a synonym for neoplasm, although this can be context
  dependent. For NETs, NCIT uses the nomenclature ''tumor'' to indicate ''well differentiated,
  low or intermediate grade tumor''. This can also be called carcinoid, see https://www.cancer.org/cancer/gastrointestinal-carcinoid-tumor/about/what-is-gastrointestinal-carcinoid.html
  We attempt to spell this out in our labels.'

contributors:
- https://orcid.org/0000-0002-6601-2165

classes:
  neoplasm: MONDO:0005070
  owl_thing: owl:Thing

relations:
  disease has location: RO:0004026

annotationProperties:
  exact_synonym: oio:hasExactSynonym
  related_synonym: oio:hasRelatedSynonym

vars:
  location: owl_thing

name:
  text: '%s neoplasm'
  vars:
  - location

annotations:
- annotationProperty: exact_synonym
  text: neoplasm of %s
  vars:
  - location
- annotationProperty: exact_synonym
  text: '%s tumor'
  vars:
  - location
- annotationProperty: exact_synonym
  text: tumor of %s
  vars:
  - location

def:
  text: A neoplasm involving a %s.
  vars:
  - location

equivalentTo:
  text: '''neoplasm'' and ''disease has location'' some %s'
  vars:
  - location