postinfectious_disease.yaml

pattern_name: postinfectious_disease

pattern_iri: http://purl.obolibrary.org/obo/mondo/patterns/postinfectious_disease.yaml

description: 'A design pattern for conditions such as post-herpetic neuralgia or postinfectious
  encephalitis, where the disease is secondary to the initial infection.

  TODO: write better guidelines on what constitutes a secondary disease vs primary.
  * We do not use this pattern for AIDS-HIV for example, instead representing this
  is using SubClassOf. * We draw a distinction between infectious and postinfectious
  encepahlitis. * we do not use this pattern for chickenpox, but we do for shingles '

contributors:
- https://orcid.org/0000-0002-6601-2165

classes:
  disease: MONDO:0000001
  infectious disease: MONDO:0005550
  organism: NCBITaxon:1

relations:
  disease arises from feature: RO:0004022

annotationProperties:
  exact_synonym: oio:hasExactSynonym
  related_synonym: oio:hasRelatedSynonym

vars:
  disease: '''organism'''
  feature: '''infectious disease'''

name:
  text: postinfectious %s arising from %s
  vars:
  - disease
  - feature

annotations:
- annotationProperty: exact_synonym
  text: post-%s %s
  vars:
  - feature
  - disease
- annotationProperty: related_synonym
  text: '%s secondary to %s'
  vars:
  - disease
  - feature

def:
  text: A post-infectious form of %s that arises as a result on an initial %s.
  vars:
  - disease
  - feature

equivalentTo:
  text: '%s and ''disease arises from feature'' some %s'
  vars:
  - disease
  - feature