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Releases: monarch-initiative/mondo

v2020-06-30

01 Jul 05:58
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New Classes

Obsoletions

  • MONDO:0000312 enlarged vestibular aqueduct --> obsolete enlarged vestibular aqueduct
  • MONDO:0002144 hyperuricemia (disease) --> obsolete hyperuricemia (disease)
  • MONDO:0003794 mediastinal neurilemmoma --> obsolete mediastinal neurilemmoma
  • MONDO:0011794 Dravet syndrome --> obsolete Dravet syndrome

Renaming

  • MONDO:0000312 enlarged vestibular aqueduct --> obsolete enlarged vestibular aqueduct
  • MONDO:0002144 hyperuricemia (disease) --> obsolete hyperuricemia (disease)
  • MONDO:0003794 mediastinal neurilemmoma --> obsolete mediastinal neurilemmoma
  • MONDO:0009191 Lowry-wood syndrome --> Lowry-Wood syndrome
  • MONDO:0010916 polycystic kidney disease 3 --> polycystic kidney disease 3 with or without polycystic liver disease
  • MONDO:0011010 Matthew-wood syndrome --> Matthew-Wood syndrome
  • MONDO:0011794 Dravet syndrome --> obsolete Dravet syndrome
  • MONDO:0018858 Graham little-Piccardi-Lassueur syndrome --> Graham Little-Piccardi-Lassueur syndrome
  • MONDO:0020791 corneal dystrophy, meesmann, 1 --> corneal dystrophy, Meesmann, 1

v2020-06-01

01 Jun 17:52
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New Classes

Obsoletions

  • MONDO:0001012 breast fibroadenosis --> obsolete breast fibroadenosis
  • MONDO:0010249 X-linked B cell surface antigen, mouse, homolog-like 1 --> obsolete X-linked B cell surface antigen, mouse, homolog-like 1
  • MONDO:0013596 nonsyndromic congenital nail disorder 10 --> obsolete nonsyndromic congenital nail disorder 10
  • MONDO:0015963 inherited renal tumor --> obsolete inherited renal tumor
  • MONDO:0015966 hereditary eye tumor --> obsolete hereditary eye tumor
  • MONDO:0015981 inherited gynecological tumor --> obsolete inherited gynecological tumor
  • MONDO:0021062 hereditary acrokeratotic poikiloderma of Kindler-Weary --> obsolete hereditary acrokeratotic poikiloderma of Kindler-Weary
  • MONDO:0023310 hemiplegic migraine --> obsolete hemiplegic migraine
  • MONDO:0023873 noonan-like/multiple giant cell lesion syndrome --> obsolete Noonan-like/multiple giant cell lesion syndrome
  • MONDO:0024597 CD3epsilon deficiency --> obsolete CD3epsilon deficiency

Renaming

  • MONDO:0001012 breast fibroadenosis --> obsolete breast fibroadenosis
  • MONDO:0001627 dementia --> dementia (disease)
  • MONDO:0006502 adult respiratory distress syndrome --> acute respiratory distress syndrome
  • MONDO:0008319 protoporphyria, erythropoietic --> protoporphyria, erythropoietic, 1
  • MONDO:0010249 X-linked B cell surface antigen, mouse, homolog-like 1 --> obsolete X-linked B cell surface antigen, mouse, homolog-like 1
  • MONDO:0013596 nonsyndromic congenital nail disorder 10 --> obsolete nonsyndromic congenital nail disorder 10
  • MONDO:0014006 intellectual disability-craniofacial dysmorphism-cryptorchidism syndrome --> Schuurs-Hoeijmakers syndrome
  • MONDO:0015023 nemaline myopathy 11 --> MYPN-related myopathy
  • MONDO:0015653 monogenic disease with epilepsy --> monogenic epilepsy
  • MONDO:0015951 genetic photodermatosis --> hereditary photodermatosis
  • MONDO:0015963 inherited renal tumor --> obsolete inherited renal tumor
  • MONDO:0015966 hereditary eye tumor --> obsolete hereditary eye tumor
  • MONDO:0015981 inherited gynecological tumor --> obsolete inherited gynecological tumor
  • MONDO:0021062 hereditary acrokeratotic poikiloderma of Kindler-Weary --> obsolete hereditary acrokeratotic poikiloderma of Kindler-Weary
  • MONDO:0023310 hemiplegic migraine --> obsolete hemiplegic migraine
  • MONDO:0023873 noonan-like/multiple giant cell lesion syndrome --> obsolete Noonan-like/multiple giant cell lesion syndrome
  • MONDO:0024597 CD3epsilon deficiency --> obsolete CD3epsilon deficiency
  • MONDO:0025481 zoonoses --> zoonosis
  • MONDO:0026733 intellectual developmental disorder, x-linked, syndromic, hackmann-di donato type --> intellectual developmental disorder, x-linked, syndromic, Hackmann-Di Donato type
  • MONDO:0032668 diamond-blackfan anemia 18 --> Diamond-Blackfan anemia 18
  • MONDO:0032669 diamond-blackfan anemia 19 --> Diamond-Blackfan anemia 19
  • MONDO:0032670 diamond-blackfan anemia 20 --> Diamond-Blackfan anemia 20
  • MONDO:0032791 coffin-siris syndrome 10 --> Coffin-Siris syndrome 10
  • MONDO:0032793 o'donnell-luria-rodan syndrome --> O'Donnell-Luria-Rodan syndrome
  • MONDO:0032841 usher syndrome, type 1m --> Usher syndrome, type 1M
  • MONDO:0032882 heyn-sproul-jackson syndrome --> Heyn-Sproul-Jackson syndrome
  • MONDO:0032885 spondyloepimetaphyseal dysplasia, isidor-toutain type --> spondyloepimetaphyseal dysplasia, Isidor-Toutain type
  • MONDO:0032886 liang-wang syndrome --> Liang-Wang syndrome
  • MONDO:0032889 poirier-bienvenu neurodevelopmental syndrome --> Poirier-Bienvenu neurodevelopmental syndrome
  • MONDO:0032901 catifa syndrome --> Catifa syndrome
  • MONDO:0032902 joubert syndrome 36 --> Joubert syndrome 36
  • MONDO:0032904 corneal dystrophy, meesmann, 2 --> corneal dystrophy, Meesmann, 2
  • MONDO:0032908 cebalid syndrome --> CEBALID syndrome
  • MONDO:0032912 coffin-siris syndrome 11 --> Coffin-Siris syndrome 11
  • MONDO:0032915 long qt syndrome 16 --> long QT syndrome 16
  • MONDO:0032916 imagawa-matsumoto syndrome --> Imagawa-Matsumoto syndrome
  • MONDO:0032922 beck-fahrner syndrome --> Beck-Fahrner syndrome
  • MONDO:0044309 diamond-blackfan anemia 16 --> Diamond-Blackfan anemia 16
  • MONDO:0044310 diamond-blackfan anemia 17 --> Diamond-Blackfan anemia 17
  • MONDO:0054588 noonan syndrome-like disorder with loose anagen hair 2 --> Noonan syndrome-like disorder with loose anagen hair 2
  • MONDO:0100101 Fetal akinesia deformation sequence 1 --> fetal akinesia deformation sequence 1
  • MONDO:0100102 Fetal akinesia deformation sequence 2 --> fetal akinesia deformation sequence 2
  • MONDO:0100103 Fetal akinesia deformation sequence 3 --> fetal akinesia deformation sequence 3
  • MONDO:0100104 Fetal akinesia deformation sequence 4 --> fetal akinesia deformation sequence 4

v2020-04-29

29 Apr 15:34
44b20f5
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Summary

  • 393 new classes
  • 43 classes were obsoleted
  • 64 classes were renamed

New Classes

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v2020-04-05

06 Apr 15:59
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Summary

  • 86 new classes
  • 23 obsoletions
  • 64 renamed classes

New Classes

Obsoletions

  • MONDO:0000184 congenital vitamin K-dependent coagulation factors combined deficiency --> obsolete congenital vitamin K-dependent coagulation factors
    com...
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v2020-03-05

06 Mar 19:57
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Summary:

  • 9 new classes
  • 7 classes obsoleted
  • 27 classes were renamed

Detailed changes:

New Classes

Obsoletions

  • MONDO:0000024 exostoses, multiple --> obsolete exostoses, multiple
  • MONDO:0006697 Chlamydophila infectious disease --> obsolete Chlamydophila infectious disease
  • MONDO:0007065 adenosine deaminase, elevated, hemolytic anemia due to --> obsolete adenosine deaminase, elevated, hemolytic anemia due to
  • MONDO:0008033 autosomal dominant limb-girdle muscular dystrophy type 1B --> obsolete autosomal dominant limb-girdle muscular dystrophy type 1B
  • MONDO:0011809 Mammographic density --> obsolete mammographic density
  • MONDO:0012372 hypertrichosis, hyperkeratosis, mental retardation, and distinctive facial features --> obsolete hypertrichosis, hyperkeratosis, mental retardation, and distinctive facial features
  • MONDO:0060722 neurodevelopmental disorder with brain, liver, and lung abnormalities --> obsolete neurodevelopmental disorder with brain, liver, and lung abnormalities

Renaming

  • MONDO:0000024 exostoses, multiple --> obsolete exostoses, multiple
  • MONDO:0005775 glucosephosphate dehydrogenase deficiency --> G6PD deficiency
  • MONDO:0006697 Chlamydophila infectious disease --> obsolete Chlamydophila infectious disease
  • MONDO:0007065 adenosine deaminase, elevated, hemolytic anemia due to --> obsolete adenosine deaminase, elevated, hemolytic anemia due to
  • MONDO:0008033 autosomal dominant limb-girdle muscular dystrophy type 1B --> obsolete autosomal dominant limb-girdle muscular dystrophy type 1B
  • MONDO:0010433 SLEB15 --> systemic lupus erythematosus, susceptibility to, 15
  • MONDO:0010624 ichthyosis follicularis-alopecia-photophobia syndrome --> IFAP/Breshek syndrome
  • MONDO:0010898 familial temporal lobe epilepsy 1 --> Autosomal dominant epilepsy with auditory features
  • MONDO:0011560 SLEB3 --> systemic lupus erythematosus, susceptibility to, 3
  • MONDO:0011807 SLEH1 --> systemic lupus erythematosus with hemolytic anemia, susceptibility to, 1
  • MONDO:0011809 Mammographic density --> obsolete mammographic density
  • MONDO:0011942 SLEN1 --> systemic lupus erythematosus with nephritis, susceptibility to, 1
  • MONDO:0011943 SLEN2 --> systemic lupus erythematosus with nephritis, susceptibility to, 2
  • MONDO:0011944 SLEN3 --> systemic lupus erythematosus with nephritis, susceptibility to, 3
  • MONDO:0012036 SLEB4 --> systemic lupus erythematosus, susceptibility to, 4
  • MONDO:0012361 SLEB5 --> systemic lupus erythematosus, susceptibility to, 5
  • MONDO:0012369 SLEB6 --> systemic lupus erythematosus, susceptibility to, 6
  • MONDO:0012372 hypertrichosis, hyperkeratosis, mental retardation, and distinctive facial features --> obsolete hypertrichosis, hyperkeratosis, mental retardation, and distinctive facial features
  • MONDO:0012403 SLEB7 --> systemic lupus erythematosus, susceptibility to, 7
  • MONDO:0012404 SLEB8 --> systemic lupus erythematosus, susceptibility to, 8
  • MONDO:0012836 SLEB12 --> systemic lupus erythematosus, susceptibility to, 12
  • MONDO:0012884 SLEB13 --> systemic lupus erythematosus, susceptibility to, 13
  • MONDO:0013152 SLEB14 --> systemic lupus erythematosus, susceptibility to, 14
  • MONDO:0013731 early-onset myopathy-areflexia-respiratory distress-dysphagia syndrome --> MEGF10-Related Myopathy
  • MONDO:0013743 autosomal systemic lupus erythematosus --> autosomal systemic lupus erythematosus type 16
  • MONDO:0020135 non-syndromic pontocerebellar hypoplasia --> pontocerebellar hypoplasia
  • MONDO:0060722 neurodevelopmental disorder with brain, liver, and lung abnormalities --> obsolete neurodevelopmental disorder with brain, liver, and lung abnormalities

Also available here changes.md

v2020-01-27

28 Jan 20:58
002131d
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2020-01-27 release

  • revise text def for MONDO:0001973
  • update label for MONDO:0014510
  • relabel MONDO:0014510; fixes #811
  • remove superclass assertion to inherited genetic disease
  • revise text def for MONDO:0001973
  • edit MONDO_0016063
  • add metadata to MONDO:0010778; addresses #1085
  • rename MONDO:0009796
  • fix typos; fixes #1103
  • obsolete MONDO:0022469; fixes #141
  • obsolete terms that have been obsoleted in GARD; addresses #141
  • remove xref to OMIM:101900
  • I don't think 'Darier disease' is considered a subclass of OMIM:101900 ACROKERATOSIS VERRUCIFORMIS
  • remove xrefs to EFO:0004124 from 'Darier disease'; fixes #10
  • EFO:0004124 no longer exists in EFO
  • rename MONDO:0009796; fixes #724
  • add new term MONDO:0100095; fixes #801
  • revise synonym; fixes #884
  • obsolete MONDO:0012647; fixes #1062
  • revise xrefs for Meige disease; fixes #1087
  • fix typo; fixes #1083
  • add axiom to MONDO_0010778; addresses #1085
  • add new term MONDO:0100094; addresses #1084
  • remove comment from MONDO:0016747; fixes #424
  • add synonym to MONDO:0014558; fixes #1052
  • edit MONDO_0016063
  • move synonyms to MONDO:0024542; fixes #1059
  • obsolete MONDO:0010394; fixes #1019
  • edit MONDO_0013981
  • added synonym: familial myoclonus
  • replaced dbxref OMIM:614937 with OMIM:PS614937
  • added new subclasses: - MYOCLONUS, FAMILIAL, 2; - myoclonus, familial, 1; fixes #1061
  • add xref and seeAlso; addresses #1054
  • revise superclass for 'Kleefstra syndrome due to 9q34 microdeletion'; fixes #1063
  • remove comment from MONDO:0016248; fixes #434
  • fix def for MONDO:0016249; addresses #434
  • obsolete Leigh disease; fixes #675
  • remove new superclass from MONDO_0024308
  • 'pseudoxanthoma elasticum (inherited or acquired)'; addresses #1015
  • add axiom linking to ncbitaxon to MONDO_0001973; fixes #809
  • revise definition for MONDO:0001973; addresses #809
  • add superclass and additional annotations to MONDO:0024308; fixes #1015
  • obsolete MONDO:0007613; fixes #1029
  • remove comment from MONDO_0005094; closes #433
  • obsolete MONDO:0022418; fixes #431
  • add synonyms to MONDO_0014812; addresses #1054
  • obsolete MONDO:0009834 pancreatic insufficiency, combined exocrine; fixes #710
  • rename MONDO:0004819; fixes #423
  • add term replaced by to MONDO_0009289
  • remove comment from MONDO_0018065; fixes #427
  • relabel MONDO_0001083
  • and remove comment on MONDO_0007600 'primary Fanconi syndrome'; fixes #428
  • obsolete MONDO:0005403 neonatal systemic lupus erthematosus; fixes #986
  • obsolete MONDO:0009289 glycogen storage disease IC; fixes #430
  • Minor BBS and PXE changes
  • PXE minor changes (see also #1046 for other PXE changes)
  • reclassified 'ischemia reperfusion injury'; fixes #1040
  • revise superclass for MONDO_0006761; addresses #1029
  • revise label for MONDO_0000595 'sexual disorder'
  • reclassify MONDO_0002134 'physiological sexual disorder'; addresses #723
  • revise label for MONDO:0016644
  • revise superclass for MONDO_0005079
  • add axiom to MONDO_0006625
  • revise superclass for MONDO_0006625; addresses #1013
  • revise superclass for MONDO_0005079; fixes #1014
  • revise text def and synonym; fixes #1032
  • update superclass and label for MONDO_0005468; fixes #1030
  • remove incorrect superclass and annotations for MONDO_0016644; fixes #1028
  • moved PMID in xref to dbxef on text def for MONDO_0004977
  • add superclass to MONDO_0005688
  • revise superclass assertions for MONDO_0005219 and MONDO_0021154; fixes #1016
  • add superclass to MONDO_0005688; fixes #1017
  • revise synonym annotations for MONDO_0008564; fixes #1006
  • remove superclass assertions for MONDO_0008608; fixes #824
  • add superclass assertion to MONDO_0015967; fixes #1022
  • BBS text def, see monarch-initiative/hpo-annotation-data#402
  • revise superclasses; fixes #990
  • revise label and superclass for MONDO_0002436
  • and add synonym to MONDO_0024623; addresses #525
  • update annotation on MONDO:0005158; fixes #991
  • revise superclasses for MONDO:0018982 'Niemann-Pick disease type C'; fixes #565
  • fix dbxrefs; addresses #1002
  • moved OMIM xref to new terem; fixes #1004
  • added def to anotia facial palsy cardiac defect'
  • added def to Anophthalmia megalocornea cardiopathy skeletal anomalies; Note - this was in Orphanet, but not xref'd in MONDO
  • added def to anophthalmia esophageal atresia cryptorchidism'
  • added def to annular constricting bands'
  • added def to angiomyomatous hamartoma'
  • added def to amyloidosis bronchopulmonary'
  • added def to alopecia universalis onychodystrophy vitiligo'

New Classes

Obsoletions

  • MONDO:0005403 neonatal systemic lupus erthematosus --> obsolete neonatal systemic lupus erthematosus
  • MONDO:0007613 fibromuscular dysplasia of arteries --> obsolete fibromuscular dysplasia of arteries
  • MONDO:0009289 glycogen storage disease IC --> obsolete glycogen storage disease IC
  • MONDO:0009834 pancreatic insufficiency, combined exocrine --> obsolete pancreatic insufficiency, combined exocrine
  • MONDO:0010394 leukoencephalopathy-metaphyseal chondrodysplasia syndrome --> obsolete leukoencephalopathy-metaphyseal chondrodysplasia syndrome
  • MONDO:0012647 generalized epilepsy with febrile seizures plus, type 3 --> obsolete generalized epilepsy with febrile seizures plus, type 3
  • MONDO:0018859 Leigh disease --> obsolete Leigh disease
  • MONDO:0021909 aplasia cutis congenita recessive --> obsolete aplasia cutis congenita recessive
  • MONDO:0022418 alopecia immunodeficiency --> obsolete alopecia immunodeficiency
  • MONDO:0022464 anophthalmia microcephaly hypogonadism --> obsolete anophthalmia microcephaly hypogonadism
  • MONDO:0022469 aortic arches defect --> obsolete aortic arches defect
  • MONDO:0022495 arthritis short stature deafness --> obsolete arthritis short stature deafness
  • MONDO:0023141 antihypertensive drugs antenatal exposure syndrome --> obsolete antihypertensive drugs antenatal exposure syndrome

Renaming

  • MONDO:0000595 sexual disorder --> sexual and gender identity disorders
  • MONDO:0001083 Fanconi syndrome --> Fanconi renotubular syndrome
  • MONDO:0002436 nose disease --> nasal disorder
  • MONDO:0004819 indolent myeloma --> indolent plasma cell myeloma
  • MONDO:0005403 neonatal systemic lupus erthematosus --> obsolete neonatal systemic lupus erthematosus
  • MONDO:0005468 hypotension (disease) --> hypotensive disorder
  • MONDO:0007613 fibromuscular dysplasia of arteries --> obsolete fibromuscular dysplasia of arteries
  • MONDO:0009289 glycogen storage disease IC --> obsolete glycogen storage disease IC
  • MONDO:0009796 gyrate atrophy --> ornithine aminotransferase deficiency
  • MONDO:0009834 pancreatic insufficiency, combined exocrine --> obsolete pancreatic insufficiency, combined exocrine
  • MONDO:0010394 leukoencephalopathy-metaphyseal chondrodysplasia syndrome --> obsolete leukoencephalopathy-metaphyseal chondrodysplasia syndrome
  • MONDO:0011891 epilepsy, childhood absence, susceptibility to, 2 --> febrile seizures, familial, 8
  • MONDO:0012647 generalized epilepsy with febrile seizures plus, type 3 --> obsolete generalized epilepsy with febrile seizures plus, type 3
  • MONDO:0014510 severe intellectual disability-epilepsy-cataract syndrome due to fatty acyl-CoA reductase 1 deficiency --> fatty acyl-CoA reductase 1 deficiency
  • MONDO:0014761 hereditary pediatric BehC'et-like disease --> hereditary pediatric Behçet-like disease
  • MONDO:0016644 Logopenic progressive aphasia --> logopenic progressive aphasia
  • MONDO:0018859 Leigh disease --> obsolete Leigh disease
  • MONDO:0021909 aplasia cutis congenita recessive --> obsolete aplasia cutis congenita recessive
  • MONDO:0022418 alopecia immunodeficiency --> obsolete alopecia immunodeficiency
  • MONDO:0022464 anophthalmia microcephaly hypogonadism --> obsolete anopht...
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v2019-11-25

26 Nov 17:54
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2019-11-25 release

  • reclasify paralysis terms - closes #622
  • obsolete MONDO:0016076 - closes #842
  • revise superclass for MONDO_0006685 - closes #580
  • obsolete MONDO:0009651 - closes #816
  • add comment to MONDO:0005259 closes #705
  • update annotations on MONDO:0006849 closes #989
  • revise superclasses for MONDO_0016823 closes #581
  • relabel MONDO:0019303 addresses #821
  • add subclassOf relations to MONDO_0008608 'Down syndrome' closes #824
  • add superclassOf axiom to MONDO_0007052 'growth hormone secreting pituitary adenoma 1' closes #692
  • add superclassOf relation to MONDO_0007052 'growth hormone secreting pituitary adenoma 1' addresses #692
  • rename MONDO:0007750 hypercholesterolemia, familial, 1 closes #729.
  • obsolete 'sensory system disease' closes #823
  • remove excluded subclass of from MONDO_0001202 closes #726
  • revise annotations for MONDO_0005305 addresses #924
  • obsolete MONDO:0001445 neurogenic bladder (disease) closes #974
  • delete xref to obsolete EFO term addresses #992
  • obsolete MONDO:0022460 closes #140
  • obsolete MONDO:0007563 and MONDO:0005305 closes #924
  • remove incorrect xref from MONDO:0016462 isolated agammaglobulinemia closes #800
  • excluding DO syns that clash with other exact syns, see #808
  • excluding DO syns that clash with other label, see #808
  • update label and syn scope for Mungan syndrome closes #887
  • relink excluded subclass of closes #898
  • reclassiify 'Hinman syndrome' and add equiv axiom to neurogenic bladder addresses #885
  • obsolete MONDO:0009639 mitochondrial myopathy with lactic acidosis closes #817
  • obsolete MONDO:0022314 closes #880
  • add def to MONDO:0013419 closes #959
  • revise superclass for MONDO_0010252 closes #926
  • add new term MONDO:0100085 cancer of long bone of upper limb closes #899
  • merged dupes for nephropathic infantile cystinosis, fixes #960
  • changes for #960
  • add MONDO:0100086 perinatal disease addresses #685
  • add new terms MONDO:0100087 familial Alzheimber disease MONDO:0100088 late-onset familial alzheimer disease closes #921
  • obsolete MONDO:0006775 closes #877
  • remove superclasses for cystic fibrosis addresses #685
  • reclassify MONDO_0004961 and MONDO:0004962 and revise text def for MONDO:0004962 per EBISPOT/efo#329 closes #490
  • Revise classification of MONDO:0044013 'puerperal disorder' closes #652
  • fix typo closes #883
  • fix typo address #926
  • revise de for MONDO:0000509 addresses #926
  • revise subclass for MONDO_0014224 addresses #926
  • change labels addresses #926
  • add axiom to actinopathy closes #942
  • update text def for MONDO:0013343 closes #939
  • revised synonym scope for 'C1Q deficiency' closes #940
  • revise subclass assertions for MONDO:0009833 closes #859
  • add missing period in text def for MONDO:0005413 addresses #685
  • relabel MONDO:0005413 and change superclass addresses #685
  • fixed issue subclassOf assertion for MONDO_0022968 addresses #841
  • obsoleted drug response terms Obsoleted these classes: MONDO_0007348 Colchicine resistance MONDO_0008697 'acetophenetidin sensitivity' MONDO_0008906 Carbimazole sensitivity MONDO_0012294 CYP2C19-related poor drug metabolism MONDO_0012148 'drug metabolism, poor, CYP2D6-related' MONDO_0014330 'eculizumab, poor response to' closes #860
  • obsolete class MONDO:0004823 addresses #841
  • obsolete MONDO:0019184 closes #836
  • update synonyms for MONDO:0060702 closes #875
  • remove dbxref from MONDO_0009290 closes #862
  • remove superclass assertions for MONDO:0009169 addresses #834
  • remove subclassof assertions Removed subClass Of assertions and added execluded subclass of annotatiions for MONDO:0010631 and MONDO:0010568 closes #912
  • add new term MONDO:0100084 actinopathy closes #900
  • remove incorrect xrefs and synonyms from endotheliitis closes #904
  • fix issues with prion disease terms addresses issues outlined in #908
  • remove subclass of assertioin for MONDO_0005772 (geotrichosis) closes #909
  • add term replaced by annotation to 'obsolete Marfan syndrome type 2' closes #913
  • Fixes gene URI issues fixes #905 also normalizes

New Classes

Obsoletions

  • MONDO:0001445 neurogenic bladder (disease) --> obsolete neurogenic bladder (disease)
  • MONDO:0004823 dextrocardia --> obsolete dextrocardia
  • MONDO:0005128 sensory system disease --> obsolete sensory system disease
  • MONDO:0005305 epistaxis --> obsolete epistaxis
  • MONDO:0006775 haemophilus influenzae meningitis --> obsolete haemophilus influenzae meningitis
  • MONDO:0007348 colchicine resistance --> obsolete colchicine resistance
  • MONDO:0007563 epistaxis, hereditary --> obsolete epistaxis, hereditary
  • MONDO:0008697 acetophenetidin sensitivity --> obsolete acetophenetidin sensitivity
  • MONDO:0008906 carbimazole sensitivity --> obsolete carbimazole sensitivity
  • MONDO:0009065 cystinosis, nephropathic --> obsolete cystinosis, nephropathic
  • MONDO:0009639 mitochondrial myopathy with lactic acidosis --> obsolete mitochondrial myopathy with lactic acidosis
  • MONDO:0009651 pseudo-Hurler ...
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2019-10-25

26 Oct 00:22
15a6fcc
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  • remove HP_0000010 'Recurrent urinary tract infections' as a dbxref fr…
  • Fixed id typo , see #890
  • obsoleting generic sucrose intolerance (a phenotype), fixes #886. Axiomatizing other intestinal malabsorbtion diseases
  • revise logical def of 'cystic fibrosis associated meconium ileum'. Addresses #685
  • fix typos. close #873
  • add new term MONDO:0100083 'hereditary thrombocytopenia and hematological cancer predisposition syndrome associated with RUNX1'. Closes #864
  • revise label, def and synonyms for MONDO_0011071. Closes #863
  • revise labels for hepatitis infection terms. Addresses #825
  • fix ID for 'sleep disorder' in superclass assertion for 'sleep-wake disorder'. Closes #866
  • obsolete MONDO:0005409 variant Creutzfeld Jacob disease. Closes #847
  • add superclass and def for LMNA-related cardiocutaneous progeria syndrome: Addresses #821
  • revise superclasses for 'Hallermann-Streiff syndrome'. addresses #821
  • revise parents and def for De Barsy syndrome. Addresses #821
  • add superclasses and def for acrogeria. Addresses #821
  • revise parent for 'premature aging'. Addresses #821
  • revise text def for 'subcorneal pustular dermatosis'. Addresses #808
  • remove HP: 0001941 as an dbxef to MONDO:0041261 'disorder of acid-base balance'. Addresses #841
  • move MONDO:0001650 'acute cystitis (disease)' to a child of MONDO:0005247 'urinary tract infection (disease)'. Addresses #841
  • remove HP_0000010 'Recurrent urinary tract infections' as a dbxref from MONDO:0001650 'acute cystitis (disease)' and MONDO:0005247 'urinary tract infection (disease)'. Addresses #841
  • add deprecated annotation to synonyms of 'intellectual disability, autosomal recessive 15'. addresses #73
  • delete SubClassOf assertion 'disease has location' some 'hepatobiliary system' (source:EFO:0006513). addresses #834
  • update def for MONDO:0016076. addresses #842

New Classes

Obsoletions

  • MONDO:0005409 variant Creutzfeld Jacob disease --> obsolete variant Creutzfeld Jacob disease
  • MONDO:0045021 sucrose intolerance disease --> obsolete sucrose intolerance disease

Renaming

  • MONDO:0005231 hepatitis C infection --> hepatitis C virus infection
  • MONDO:0005344 hepatitis B infection --> hepatitis B virus infection
  • MONDO:0005354 chronic hepatitis C infection --> chronic hepatitis C virus infection
  • MONDO:0005366 chronic hepatitis B infection --> chronic hepatitis B virus infection
  • MONDO:0005409 variant Creutzfeld Jacob disease --> obsolete variant Creutzfeld Jacob disease
  • MONDO:0005788 hepatitis E infection --> hepatitis E virus infection
  • MONDO:0005789 hepatitis D infection --> hepatitis D virus infection
  • MONDO:0005790 hepatitis A infection --> hepatitis A virus infection
  • MONDO:0008608 down syndrome --> Down syndrome
  • MONDO:0008893 c syndrome --> C syndrome
  • MONDO:0009168 fowler syndrome --> Fowler syndrome
  • MONDO:0009320 hall-Riggs syndrome --> Hall-Riggs syndrome
  • MONDO:0010621 child syndrome --> CHILD syndrome
  • MONDO:0011071 hereditary thrombocytopenia with normal platelets-hematological cancer predisposition syndrome --> hereditary thrombocytopenia and hematologic cancer predisposition syndrome
  • MONDO:0012495 spondyloepimetaphyseal dysplasia, GeneviC(ve type --> spondyloepimetaphyseal dysplasia, Genevieve type
  • MONDO:0018019 Lead poisoning --> lead poisoning
  • MONDO:0045021 sucrose intolerance disease --> obsolete sucrose intolerance disease

v2019-09-30

01 Oct 22:14
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  • revise subclass assertions for hepatisis terms and relabel terms. Addresses #825
  • ntr phrynoderma issue #773
  • add new term MONDO:0100080 sleep disorder and move insomnia (disease)
  • update defs for methylmalonic aciduria and homocystinuria type cblF
  • revise defs for Stickler syndrome type 2 and 3. addresses #808
  • update text def for angle-closure glaucoma #814
  • revise def for MONDO:0004471 bacterial arthritis. Addresses #808
  • revise subclass assertions for hepatisis terms and relabel terms. Addresses #825

New Classes

Obsoletions

None

Renaming

v2019-08-28

29 Aug 17:04
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2019-08-28 release

  • remove duplicate synonym from 'immune system disease'. Addresses #749
  • remove superclass assertion for 'sensory system disease'. Addresses #747
  • remove synonym from MONDO_0001071. Addresses #739
  • Making UMLSs not found in medgen disease subset
  • Adding equivalencies, see https://github.com/monarch-initiative/mondo/issues/796
  • revise definition for MONDO_0100082. addresses #713
  • add back dbxef and mark equivalentObsolete for MONDO_0005590. Closes #777
  • add sublcassOf to Noonan syndrome and remove subclassOf, add excludedSubclassOf. Addresses #606
  • ntr refeeding syndrome issue #770
  • add new term MONDO_0100082 LEOPARD syndrome 1, addresses #713
  • fix typo in def of MONDO:0009079, addresses #655
  • revise def of MONDO:0009079, addresses #655
  • revised equiv axioms for 'abdominal tuberculosis', 'eye allergy' and 'gastrointestinal tuberculosis'. Addresses #653
  • change synonyms from exact to broad for MONDO_0005590. Addresses #777
  • change dbxref for synonym for MONDO_0011581. Addresses #577

New Classes