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Update deps
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@moshi4
moshi4 committed Sep 8, 2024
1 parent 64db1ba commit 470b403
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Showing 2 changed files with 54 additions and 59 deletions.
79 changes: 38 additions & 41 deletions requirements-dev.lock
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Original file line number Diff line number Diff line change
Expand Up @@ -10,21 +10,19 @@
# universal: false

-e file:.
altair==5.3.0
altair==5.4.1
# via streamlit
asttokens==2.4.1
# via stack-data
astunparse==1.6.3
# via griffe
attrs==24.1.0
attrs==24.2.0
# via jsonschema
# via referencing
babel==2.15.0
babel==2.16.0
# via mkdocs-material
backcall==0.2.0
# via ipython
backports-strenum==1.3.1
# via griffe
beautifulsoup4==4.12.3
# via nbconvert
biopython==1.83
Expand All @@ -34,9 +32,9 @@ bleach==6.1.0
# via nbconvert
blinker==1.8.2
# via streamlit
cachetools==5.4.0
cachetools==5.5.0
# via streamlit
certifi==2024.7.4
certifi==2024.8.30
# via requests
cfgv==3.4.0
# via pre-commit
Expand All @@ -54,11 +52,11 @@ comm==0.2.2
# via ipykernel
contourpy==1.1.1
# via matplotlib
coverage==7.6.0
coverage==7.6.1
# via pytest-cov
cycler==0.12.1
# via matplotlib
debugpy==1.8.3
debugpy==1.8.5
# via ipykernel
decorator==5.1.1
# via ipython
Expand All @@ -68,11 +66,11 @@ distlib==0.3.8
# via virtualenv
exceptiongroup==1.2.2
# via pytest
executing==2.0.1
executing==2.1.0
# via stack-data
fastjsonschema==2.20.0
# via nbformat
filelock==3.15.4
filelock==3.16.0
# via virtualenv
fonttools==4.53.1
# via matplotlib
Expand All @@ -82,20 +80,20 @@ gitdb==4.0.11
# via gitpython
gitpython==3.1.43
# via streamlit
griffe==0.48.0
griffe==1.2.0
# via mkdocstrings-python
identify==2.6.0
# via pre-commit
idna==3.7
idna==3.8
# via requests
importlib-metadata==8.2.0
importlib-metadata==8.4.0
# via jupyter-client
# via markdown
# via mkdocs
# via mkdocs-get-deps
# via mkdocstrings
# via nbconvert
importlib-resources==6.4.0
importlib-resources==6.4.4
# via jsonschema
# via jsonschema-specifications
# via matplotlib
Expand Down Expand Up @@ -132,9 +130,9 @@ jupyterlab-pygments==0.3.0
# via nbconvert
jupytext==1.16.4
# via mkdocs-jupyter
kiwisolver==1.4.5
kiwisolver==1.4.7
# via matplotlib
markdown==3.6
markdown==3.7
# via mkdocs
# via mkdocs-autorefs
# via mkdocs-material
Expand Down Expand Up @@ -164,26 +162,29 @@ mergedeep==1.3.4
# via mkdocs-get-deps
mistune==3.0.2
# via nbconvert
mkdocs==1.6.0
mkdocs==1.6.1
# via mkdocs-autorefs
# via mkdocs-jupyter
# via mkdocs-material
# via mkdocstrings
mkdocs-autorefs==1.0.1
mkdocs-autorefs==1.2.0
# via mkdocstrings
# via mkdocstrings-python
mkdocs-get-deps==0.2.0
# via mkdocs
mkdocs-jupyter==0.24.8
mkdocs-material==9.5.31
mkdocs-material==9.5.34
# via mkdocs-jupyter
mkdocs-material-extensions==1.3.1
# via mkdocs-material
mkdocstrings==0.25.2
mkdocstrings==0.26.1
# via mkdocstrings-python
mkdocstrings-python==1.10.7
mkdocstrings-python==1.11.1
# via mkdocstrings
mypy-extensions==1.0.0
# via black
narwhals==1.6.2
# via altair
nbclient==0.10.0
# via nbconvert
nbconvert==7.16.4
Expand All @@ -197,7 +198,6 @@ nest-asyncio==1.6.0
nodeenv==1.9.1
# via pre-commit
numpy==1.24.4
# via altair
# via biopython
# via contourpy
# via matplotlib
Expand All @@ -216,10 +216,9 @@ packaging==24.1
# via nbconvert
# via pytest
# via streamlit
paginate==0.5.6
paginate==0.5.7
# via mkdocs-material
pandas==2.0.3
# via altair
# via streamlit
pandocfilters==1.5.1
# via nbconvert
Expand All @@ -237,7 +236,7 @@ pillow==10.4.0
# via streamlit
pkgutil-resolve-name==1.3.10
# via jsonschema
platformdirs==4.2.2
platformdirs==4.3.1
# via black
# via jupyter-core
# via mkdocs-get-deps
Expand All @@ -248,7 +247,7 @@ pluggy==1.5.0
pre-commit==3.5.0
prompt-toolkit==3.0.47
# via ipython
protobuf==5.27.3
protobuf==5.28.0
# via streamlit
psutil==6.0.0
# via ipykernel
Expand All @@ -269,7 +268,7 @@ pygments==2.18.0
pymdown-extensions==10.9
# via mkdocs-material
# via mkdocstrings
pyparsing==3.1.2
pyparsing==3.1.4
# via matplotlib
pytest==8.3.2
# via pytest-cov
Expand All @@ -282,7 +281,7 @@ python-dateutil==2.9.0.post0
pytz==2024.1
# via babel
# via pandas
pyyaml==6.0.1
pyyaml==6.0.2
# via jupytext
# via mkdocs
# via mkdocs-get-deps
Expand All @@ -291,7 +290,7 @@ pyyaml==6.0.1
# via pyyaml-env-tag
pyyaml-env-tag==0.1
# via mkdocs
pyzmq==26.1.0
pyzmq==26.2.0
# via ipykernel
# via jupyter-client
referencing==0.35.1
Expand All @@ -302,24 +301,24 @@ regex==2024.7.24
requests==2.32.3
# via mkdocs-material
# via streamlit
rich==13.7.1
rich==13.8.0
# via streamlit
rpds-py==0.19.1
rpds-py==0.20.0
# via jsonschema
# via referencing
ruff==0.5.6
ruff==0.6.4
six==1.16.0
# via asttokens
# via astunparse
# via bleach
# via python-dateutil
smmap==5.0.1
# via gitdb
soupsieve==2.5
soupsieve==2.6
# via beautifulsoup4
stack-data==0.6.3
# via ipython
streamlit==1.37.0
streamlit==1.38.0
# via pygenomeviz
tenacity==8.5.0
# via streamlit
Expand All @@ -332,8 +331,6 @@ tomli==2.0.1
# via coverage
# via jupytext
# via pytest
toolz==0.12.1
# via altair
tornado==6.4.1
# via ipykernel
# via jupyter-client
Expand All @@ -359,18 +356,18 @@ tzdata==2024.1
# via pandas
urllib3==2.2.2
# via requests
virtualenv==20.26.3
virtualenv==20.26.4
# via pre-commit
watchdog==4.0.1
watchdog==4.0.2
# via mkdocs
# via streamlit
wcwidth==0.2.13
# via prompt-toolkit
webencodings==0.5.1
# via bleach
# via tinycss2
wheel==0.43.0
wheel==0.44.0
# via astunparse
zipp==3.19.2
zipp==3.20.1
# via importlib-metadata
# via importlib-resources
34 changes: 16 additions & 18 deletions requirements.lock
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Original file line number Diff line number Diff line change
Expand Up @@ -10,18 +10,18 @@
# universal: false

-e file:.
altair==5.3.0
altair==5.4.1
# via streamlit
attrs==24.1.0
attrs==24.2.0
# via jsonschema
# via referencing
biopython==1.83
# via pygenomeviz
blinker==1.8.2
# via streamlit
cachetools==5.4.0
cachetools==5.5.0
# via streamlit
certifi==2024.7.4
certifi==2024.8.30
# via requests
charset-normalizer==3.3.2
# via requests
Expand All @@ -37,9 +37,9 @@ gitdb==4.0.11
# via gitpython
gitpython==3.1.43
# via streamlit
idna==3.7
idna==3.8
# via requests
importlib-resources==6.4.0
importlib-resources==6.4.4
# via jsonschema
# via jsonschema-specifications
# via matplotlib
Expand All @@ -50,7 +50,7 @@ jsonschema==4.23.0
# via altair
jsonschema-specifications==2023.12.1
# via jsonschema
kiwisolver==1.4.5
kiwisolver==1.4.7
# via matplotlib
markdown-it-py==3.0.0
# via rich
Expand All @@ -60,8 +60,9 @@ matplotlib==3.7.5
# via pygenomeviz
mdurl==0.1.2
# via markdown-it-py
numpy==1.24.4
narwhals==1.6.2
# via altair
numpy==1.24.4
# via biopython
# via contourpy
# via matplotlib
Expand All @@ -75,22 +76,21 @@ packaging==24.1
# via matplotlib
# via streamlit
pandas==2.0.3
# via altair
# via streamlit
pillow==10.4.0
# via matplotlib
# via streamlit
pkgutil-resolve-name==1.3.10
# via jsonschema
protobuf==5.27.3
protobuf==5.28.0
# via streamlit
pyarrow==17.0.0
# via streamlit
pydeck==0.9.1
# via streamlit
pygments==2.18.0
# via rich
pyparsing==3.1.2
pyparsing==3.1.4
# via matplotlib
python-dateutil==2.9.0.post0
# via matplotlib
Expand All @@ -102,23 +102,21 @@ referencing==0.35.1
# via jsonschema-specifications
requests==2.32.3
# via streamlit
rich==13.7.1
rich==13.8.0
# via streamlit
rpds-py==0.19.1
rpds-py==0.20.0
# via jsonschema
# via referencing
six==1.16.0
# via python-dateutil
smmap==5.0.1
# via gitdb
streamlit==1.37.0
streamlit==1.38.0
# via pygenomeviz
tenacity==8.5.0
# via streamlit
toml==0.10.2
# via streamlit
toolz==0.12.1
# via altair
tornado==6.4.1
# via streamlit
typing-extensions==4.12.2
Expand All @@ -129,7 +127,7 @@ tzdata==2024.1
# via pandas
urllib3==2.2.2
# via requests
watchdog==4.0.1
watchdog==4.0.2
# via streamlit
zipp==3.19.2
zipp==3.20.1
# via importlib-resources

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