Changed ohara 2011 state order

c/bartolucci-2020.mmt

@@ -4,7 +4,7 @@ version: 20240815
 mmt_authors: Michael Clerx
 desc: """
     The 2020 "BPS" model of the human ventricular AP by Bartolucci et al. [1].
-    
+
     The model is based on the cipa adaptation [2] of the O'Hara model [3].
     Changes to [2] are indicated throughout the code.
 
@@ -13,11 +13,11 @@ desc: """
     by comparing the calculates derivatives to those calculated from both the
     original matlab code and the author-provided CellML, both of which matched
     to within machine precision.
-    
+
     After verification, the INaK formulation was corrected as described in [6].
     Note that the CellML version uses an elevated external calcium of 2.7,
     while the paper and the matlab code use the default value of 1.8.
-    
+
     References:
 
     [1] Bartolucci C, Passini E, Hyttinen J, Paci M & Severi S (2020).
@@ -411,7 +411,7 @@ dot(jnca) = (inf - jnca) / 1 [ms]
 dot(nca) = 1000 [1/ms] * anca - 150 [1/ms] * jnca * nca
     anca = (1 - nca) / (1 + 0.05 [mM] / Ca_ss)^4
 r_down = 0.1 [1/ms]
-    in [1/ms]   # or ms ?
+    in [1/ms]
 r_up = r_down * nca / (1 - nca)
     in [1/ms]
 # Omega and psi rate
@@ -494,7 +494,7 @@ ICaL = (icalp.ICaLp * camk.f + ICaLnp * (1 - camk.f))
     in [A/F]
 ICaNa = (icalp.ICaNap * camk.f + ICaNanp * (1 - camk.f))
     in [A/F]
-    
+
 #
 # Phosphorylated ICaL
 #
@@ -1006,7 +1006,7 @@ g_irel_max = 0.02 [1/ms]
     in [1/ms]
 Jrelnp = frel * g_irel_max * SRCass * o * c * (Ca_sr - Ca_ss)
     in [mM/ms]
-Jrelp = 1.25 * frel * g_irel_max * SRCass * o * cp * (Ca_sr - Ca_ss) 
+Jrelp = 1.25 * frel * g_irel_max * SRCass * o * cp * (Ca_sr - Ca_ss)
     in [mM/ms]
 Jrel = (1 - camk.f) * Jrelnp + camk.f * Jrelp
     desc: SR Calcium release flux via Ryanodine receptor
@@ -1022,7 +1022,7 @@ f = if(cell.mode == 1, 1.3, 1)
 j = 0.004375 [mM/ms]
     in [mM/ms]
 k = 0.00092 [mM]
-    in [mM]    
+    in [mM]
 Jupnp = j * f * Ca_i / (Ca_i + k)
     in [mM/ms]
 Jupp = 2.75 * j * f * Ca_i / (Ca_i + k - 0.00017 [mM])

c/ohara-2011.mmt

@@ -83,9 +83,9 @@ ical.fs           = 1
 ical.fcaf         = 1
 ical.fcas         = 1
 ical.jca          = 1
-ical.nca          = 0.2
 ical.ffp          = 1
 ical.fcafp        = 1
+ical.nca          = 0.2
 ikr.xf            = 0
 ikr.xs            = 0
 iks.x1            = 0

c/trovato-2020.mmt

@@ -95,7 +95,7 @@ ryr.Jrel2     =  1.25045800437316998e-69
 IP3.u         =  4.66236137183557997e-1
 
 #
-# Simulation variables
+# Simulator variables
 #
 [engine]
 time = 0 [ms]