Most python scripts written for Python3, some legacy scripts may be present.
annotation file (gff,gtf,bed,etc) manipulations
manipulate fasta files
scripts for running and parsing gwas data (fst outlier, treeWAS, etc)
no other home :'(
summarize & explore pangenome analysis results from Roary
for working with pool-seq data from populations
calculate population genetics statistics
scripts to annotate and summarize recombinant tracts
scripts for parsing output of DE analysis. See RNAseq repo for analysis scripts
download & manipulate sequence data
condor and bash scripts for denovo assembly and annotation with SPAdes and Prokka
vcf manipulators