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Building against HDF5/1.14.4.3 #958

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pgrt opened this issue Aug 20, 2024 · 1 comment
Open

Building against HDF5/1.14.4.3 #958

pgrt opened this issue Aug 20, 2024 · 1 comment

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@pgrt
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pgrt commented Aug 20, 2024

Hello,

In Debian HDF5 1.14.4.3 is about to replace 1.10, and sra-tools fails to build against it.

We found that adding -DH5_USE_110_API to the CPPFLAGS allows one to build against 1.14, while still building against 1.10.

We will add this flag in the Debian package as of now, but for sure if you add it yourself in the future it will become easier and we will remove our addition.

Thanks a lot,

Pierre

@durbrow
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durbrow commented Aug 22, 2024

Thanks for letting us know. The SRA submission pipeline uses HDF5 for loading PacBio data into the archive, and the pipeline still uses the older HDF5 API. We plan to add CMake code to deal with both older and newer versions of the API. Until then, we won't be able to fix this because it would break the submission pipeline.

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