Skip to content

Issues: ncbi/sra-tools

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

76 Open 782 Closed
76 Open 782 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

"Failed to call external services." error
#987 opened Nov 12, 2024 by ThibauldMichel
3
List contents of a cart file?
#969 opened Sep 24, 2024 by amstilp
1
Required firewall rules for SRA toolkit
#959 opened Aug 20, 2024 by MaxDegenerEvotec
Building against HDF5/1.14.4.3
#958 opened Aug 20, 2024 by pgrt
1
Feature suggestion: option in fasterq-dump to output the FASTQ files already gzipped
#956 opened Aug 14, 2024 by fantauzzi
no clip option for fasterq-dump
#952 opened Jul 23, 2024 by paulzierep
2
fastq-dump/fasterq-dump: can't open JTFH01xxxxxx as a RefSeq or as a WGS
#946 opened Jul 13, 2024 by sa2adeel
27
vdb-config: use AWS IAM role instead of credentials file
#945 opened Jul 4, 2024 by peter-sandor-1992
1
fasterq-dump into six files?
#944 opened Jul 1, 2024 by jeongyeonkim95
1
error code 3 for some nanopore datasets
#943 opened Jun 27, 2024 by yfukasawa
1
Unresolved dependencies with prefetch followed by fatal segmentation fault error
#940 opened Jun 12, 2024 by guester
1
vdb-config
#936 opened May 8, 2024 by anjilsri
1
prefetch - failed to verify error
#920 opened Mar 23, 2024 by uasic
26
Prefetch SSL Certificate Verification Error in NCBI SRA Toolkit
#905 opened Feb 1, 2024 by angerray
5
fasterq-dump overloads memory
#903 opened Jan 29, 2024 by mfansler
13
fasterq-dump quit with error code 3; err: the input data is missing the QUALITY-column
#902 opened Jan 28, 2024 by huang-juanjuan
fasterq-dump: cannot create this file, full path is changed with _1 and _2
#899 opened Jan 25, 2024 by lindenb
1
How to check the integrity of BAM and FASTQ files after conversion
#890 opened Dec 14, 2023 by zhuchcn
4
Numerous scRNA-seq Datasets Having Potential Corruption Issues Upon Conversion to .SRA Format
#889 opened Dec 14, 2023 by Sandman-1
1
fastq-dump error in MacOs
#885 opened Nov 27, 2023 by nana-marinbio
Fasterq-dump downloading temp files more than double the size of the original FASTQ files.
#869 opened Oct 28, 2023 by Vishnu-Prasad-O
fasterq-dump fails due to output file naming error
#865 opened Oct 16, 2023 by dmalzl
8
consider adding a flake.nix
#854 opened Sep 30, 2023 by MatrixManAtYrService
CentOS binaries: dump-ref-fasta executable built only(?) for CentOS (>= 8)
#852 opened Sep 11, 2023 by HenrikBengtsson
3
"fasterq-dump.3.0.7 err: the input data is missing the QUALITY-column" BUT sra QUALITY column is present.
#851 opened Sep 8, 2023 by GabeAl
1
ProTip! Updated in the last three days: updated:>2024-11-22.