Merge pull request #132 from neherlab/chore/ci-smoke-tests

chore: add smoke tests on ci
neherlab · Feb 12, 2025 · 28f27eb · 28f27eb
2 parents 2470148 + 44cbe94
commit 28f27eb
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Showing 3 changed files with 49 additions and 12 deletions.
diff --git a/.github/workflows/cli.yml b/.github/workflows/cli.yml
@@ -1,5 +1,3 @@
-name: cli
-
 on:
   push:
     branches: [ 'master', 'release', 'rust' ]
@@ -54,6 +52,7 @@ jobs:
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - name: "Setup cache for Rust and Cargo"
         uses: actions/cache@v4
@@ -109,6 +108,7 @@ jobs:
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - name: "Setup cache for Rust and Cargo"
         uses: actions/cache@v4
@@ -157,6 +157,7 @@ jobs:
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - name: "Setup cache for Rust and Cargo"
         uses: actions/cache@v4
@@ -190,6 +191,30 @@ jobs:
         run: |
           ./dev/docker/run ./dev/dev lint
 
+  run-smoke-tests:
+    name: "Smoke tests"
+    needs: [ build-cli ]
+    runs-on: ubuntu-24.04
+
+    steps:
+      - name: "Checkout code"
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+          submodules: true
+          lfs: true
+
+      - name: "Download build artifacts"
+        uses: actions/download-artifact@v4
+        with:
+          pattern: pangraph-*
+          merge-multiple: true
+          path: ".out"
+
+      - name: "Run smoke tests"
+        run: |
+          chmod +x ./.out/pangraph-x86_64-unknown-linux-gnu
+          ./dev/run-smoke-tests ./.out/pangraph-x86_64-unknown-linux-gnu --fast
 
 
   run-compat-tests-x86_64-unknown-linux-gnu:
@@ -203,6 +228,7 @@ jobs:
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - name: "Download build artifacts"
         uses: actions/download-artifact@v4
@@ -227,6 +253,7 @@ jobs:
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - name: "Download build artifacts"
         uses: actions/download-artifact@v4
@@ -347,6 +374,7 @@ jobs:
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - name: "Download build artifacts"
         uses: actions/download-artifact@v4
@@ -368,7 +396,7 @@ jobs:
 
   publish-to-github-releases:
     name: "Publish to GitHub Releases"
-    needs: [ build-cli, run-unit-tests, run-lints, run-smoke-tests, run-linux-distros-test, check-cli-docs ]
+    needs: [ build-cli, run-unit-tests, run-lints, run-smoke-tests, run-compat-tests-x86_64-unknown-linux-gnu, run-compat-tests-x86_64-unknown-linux-musl, run-compat-tests-x86_64-apple-darwin, run-compat-tests-aarch64-apple-darwin, run-compat-tests-x86_64-pc-windows-gnu, check-cli-docs ]
     if: endsWith(github.ref, '/release-cli')
     runs-on: ubuntu-24.04
 
@@ -378,6 +406,7 @@ jobs:
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - name: "Download build artifacts"
         uses: actions/download-artifact@v4
@@ -405,7 +434,7 @@ jobs:
 
   publish-to-docker-hub:
     name: "Publish to Docker Hub"
-    needs: [ build-cli, run-unit-tests, run-lints, run-smoke-tests, run-linux-distros-test, check-cli-docs ]
+    needs: [ build-cli, run-unit-tests, run-lints, run-smoke-tests, run-compat-tests-x86_64-unknown-linux-gnu, run-compat-tests-x86_64-unknown-linux-musl, run-compat-tests-x86_64-apple-darwin, run-compat-tests-aarch64-apple-darwin, run-compat-tests-x86_64-pc-windows-gnu, check-cli-docs ]
     if: endsWith(github.ref, '/release-cli')
     runs-on: ubuntu-24.04
 
@@ -415,6 +444,7 @@ jobs:
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - name: "Download build artifacts"
         uses: actions/download-artifact@v4

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -1,5 +1,3 @@
-name: docs
-
 on:
   push:
     branches: [ 'release-docs' ]
@@ -28,10 +26,12 @@ jobs:
       name: ${{ github.ref }}
 
     steps:
-      - uses: "actions/checkout@v4"
+      - name: "Checkout code"
+        uses: actions/checkout@v4
         with:
           fetch-depth: 1
           submodules: true
+          lfs: true
 
       - uses: "actions/setup-node@v4"
         with:

diff --git a/.github/workflows/pypangraph.yml b/.github/workflows/pypangraph.yml
@@ -1,5 +1,3 @@
-name: pypangraph
-
 on:
   push:
     branches: [ 'master', 'release-pypangraph' ]
@@ -40,7 +38,11 @@ jobs:
 
     steps:
       - name: "Checkout code"
-      - uses: actions/checkout@v4
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+          submodules: true
+          lfs: true
 
       - name: "Set up Python ${{ matrix.python-version }}"
         uses: actions/setup-python@v3
@@ -73,7 +75,11 @@ jobs:
 
     steps:
       - name: "Checkout code"
-      - uses: actions/checkout@v4
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+          submodules: true
+          lfs: true
 
       - name: "Setup Python"
         uses: actions/setup-python@v3
@@ -86,7 +92,8 @@ jobs:
           pip install build
 
       - name: "Build package"
-        run: python -m build
+        run: |
+          python -m build
 
       - name: "Publish package"
         uses: pypa/gh-action-pypi-publish@release/v1