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docs: fix footnote
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@ivan-aksamentov
ivan-aksamentov committed Feb 12, 2025
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Expand Up @@ -126,7 +126,7 @@ You can also download pangraph programmatically, for example to add it to your D

## optional dependencies - mmseqs2

When building graphs, in addition to the native _minimap2_, Pangraph can use [_mmseqs2_](https://github.com/soedinglab/MMseqs2) as an alignment kernel.[^2] _mmseqs2_ is able to find homology between sequences with up to around 30% sequence divergence, at the cost of higher computational time.
When building graphs, in addition to the native _minimap2_, Pangraph can use [_mmseqs2_](https://github.com/soedinglab/MMseqs2) as an alignment kernel.[^1] _mmseqs2_ is able to find homology between sequences with up to around 30% sequence divergence, at the cost of higher computational time.

Use of this kernel requires installation of _mmseqs2_. This can be done for example using conda with:

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