Suppress warning and stdout messages in Jupyter notebooks #1161
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Fixes #1160.
Additionally, a new parameter has been added to the logger to suppress duplicate warning messages.
I had to disable the cocos-check after rewriting the AST, because this was giving some error messages although the model was compiling file. We decided earlier that cocos checks do not have to make sense after rewriting the AST; the model has at that point already been checked for correctness.