Executables and code for "Using metabolic networks to predict cross-feeding and competition interactions between microorganisms" Silva et al.
code is organized in folders as follows:
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networkreconstruction: code employed to reconstruct and check metabolic networks
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kmeans: code employed to divide dataset into folds for the cross-validation and generation of training files
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ML_models: code employed to train and test all machine learning models employed
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ML_models/models: trained models for each algorithm
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data: datafiles employed to carry out the research described in the article
Be sure hardcoded paths are changed