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spring cleaning: removing bugs and code smells #261

Merged
merged 20 commits into from
Apr 2, 2024
Merged

spring cleaning: removing bugs and code smells #261

merged 20 commits into from
Apr 2, 2024

Commits on Mar 4, 2024

  1. removed non-existing argument from aln docstring

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    1b15 committed Mar 4, 2024
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  2. removed params['bold'] option

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    1b15 committed Mar 4, 2024
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  3. cleaned up bold initialization check

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    1b15 committed Mar 4, 2024
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  4. removed unreachable condition

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    1b15 committed Mar 4, 2024
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  5. fix continue_run order

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    1b15 committed Mar 4, 2024
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  6. fix typo

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    1b15 committed Mar 4, 2024
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  7. clean up simulateBold

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    1b15 committed Mar 4, 2024
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  8. fix continue_run for chunkwise=True

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    1b15 committed Mar 4, 2024
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  9. simplified outputDict.items()

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    1b15 committed Mar 4, 2024
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  10. major fixes: setOutput / BOLD

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    1b15 committed Mar 4, 2024
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  11. remove unused arguments

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    1b15 committed Mar 4, 2024
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  12. fixed aln minimal notebook

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    1b15 committed Mar 4, 2024
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Commits on Mar 5, 2024

  1. fixes to multimodel, testexploration, and continue_run

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    1b15 committed Mar 5, 2024
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  2. reverted to automatic append for BOLD outputs

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    1b15 committed Mar 5, 2024
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  3. remove duplicate arguments

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    1b15 committed Mar 5, 2024
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Commits on Mar 6, 2024

  1. removed unnecessary append after reverting to default append for BOLD

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    1b15 committed Mar 6, 2024
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Commits on Mar 11, 2024

  1. remove unused self.start_t, fix BOLD append for multimodel

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    1b15 committed Mar 11, 2024
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  2. allow continue_run=True on first model run

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    1b15 committed Mar 11, 2024
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Commits on Mar 12, 2024

  1. allow continue_run=True on first multimodel run

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    1b15 committed Mar 12, 2024
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  2. removed first run continue_run warnings

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    1b15 committed Mar 12, 2024
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