Refs #82. explicitly import mantid in example notebooks

neutrons · Jan 29, 2018 · 47a4e57 · 47a4e57
1 parent a65dcf0
commit 47a4e57
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Showing 2 changed files with 89 additions and 32 deletions.
diff --git a/examples/getdos2-V_Ei120meV-noUI.ipynb b/examples/getdos2-V_Ei120meV-noUI.ipynb
@@ -34,7 +34,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Get python tools ready"
+    "Get python tools ready. This may takes a while"
    ]
   },
   {
@@ -50,7 +50,7 @@
     "from matplotlib import pyplot as plt\n",
     "%matplotlib notebook\n",
     "# %matplotlib inline\n",
-    "\n",
+    "import mantid\n",
     "from multiphonon import getdos\n",
     "from multiphonon.sqe import plot as plot_sqe"
    ]
@@ -65,7 +65,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "projectdir = os.path.abspath('./V_Ei120meV-noUI')\n",
@@ -93,7 +95,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "dest = 'ARCS_V_annulus.nxs'\n",
@@ -112,7 +116,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "%%time\n",
@@ -129,7 +135,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "ls"
@@ -225,7 +233,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "%%time\n",
@@ -238,7 +248,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "ls -tl {workdir}/{iqe_h5}"
@@ -254,7 +266,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "iqe = hh.load(os.path.join(workdir, iqe_h5))\n",
@@ -286,7 +300,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "iqe2 = iqe.copy()\n",
@@ -328,7 +344,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "for msg in getdos.getDOS(\n",
@@ -362,7 +380,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "ls {workdir}/"
@@ -378,7 +398,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "dos = hh.load(os.path.join(workdir, 'final-dos.h5'))\n",
@@ -410,7 +432,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "plt.figure(figsize=(5,3))\n",
@@ -421,7 +445,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "plt.figure(figsize=(6,4))\n",
@@ -431,7 +457,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "plt.figure(figsize=(8, 4))\n",

diff --git a/examples/getdos2-V_Ei120meV.ipynb b/examples/getdos2-V_Ei120meV.ipynb
@@ -38,7 +38,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Get python tools ready"
+    "Get python tools ready, this may take a while"
    ]
   },
   {
@@ -54,7 +54,7 @@
     "from matplotlib import pyplot as plt\n",
     "%matplotlib notebook\n",
     "# %matplotlib inline\n",
-    "\n",
+    "import mantid\n",
     "from multiphonon.sqe import plot as plot_sqe\n",
     "from multiphonon.ui.getdos import Context, NxsWizardStart, QEGridWizardStart, GetDOSWizStart"
    ]
@@ -89,7 +89,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "workdir = os.path.abspath('./V_Ei120meV')\n",
@@ -135,7 +137,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "dest = 'ARCS_V_annulus.nxs'\n",
@@ -154,7 +158,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "%%time\n",
@@ -171,7 +177,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "ls"
@@ -225,7 +233,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "NxsWizardStart(context).show()"
@@ -276,7 +286,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "QEGridWizardStart(context).show()"
@@ -292,7 +304,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "%%script bash\n",
@@ -309,7 +323,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "iqe = hh.load('work/iqe.h5')\n",
@@ -342,7 +358,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "iqe2 = iqe.copy()\n",
@@ -406,6 +424,7 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
+    "collapsed": true,
     "scrolled": true
    },
    "outputs": [],
@@ -467,7 +486,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "ls work/"
@@ -483,7 +504,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "dos = hh.load('work/final-dos.h5')\n",
@@ -515,7 +538,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "plt.figure(figsize=(5,3))\n",
@@ -525,7 +550,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "plt.figure(figsize=(6,4))\n",
@@ -535,7 +562,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {},
+   "metadata": {
+    "collapsed": true
+   },
    "outputs": [],
    "source": [
     "plt.figure(figsize=(8, 4))\n",