Merge pull request #67 from mirpedrol/docs

small docs modifications
nextflow-io · Jul 6, 2023 · 823b097 · 823b097
2 parents 182c19a + 28aaa09
commit 823b097
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diff --git a/docs/nextflow_schema/sample_sheet_schema_examples.md b/docs/nextflow_schema/sample_sheet_schema_examples.md
@@ -37,14 +37,16 @@ You can see this, used for validating sample sheets with `--input` here: [`asset
       "fastq_1": {
         "type": "string",
         "pattern": "^\\S+\\.f(ast)?q\\.gz$",
+        "format": "file-path",
         "errorMessage": "FastQ file for reads 1 must be provided, cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
       },
       "fastq_2": {
         "errorMessage": "FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'",
         "anyOf": [
           {
             "type": "string",
-            "pattern": "^\\S+\\.f(ast)?q\\.gz$"
+            "pattern": "^\\S+\\.f(ast)?q\\.gz$",
+            "format": "file-path"
           },
           {
             "type": "string",

diff --git a/docs/nextflow_schema/sample_sheet_schema_specification.md b/docs/nextflow_schema/sample_sheet_schema_specification.md
@@ -68,7 +68,7 @@ Fields that are present in the sample sheet, but not in the schema will be ignor
 ## Common keys
 
 The majority of schema keys for sample sheet schema validation are identical to the Nextflow schema.
-For example: `type`, `pattern`, `format`, `errorMessage` and so on.
+For example: `type`, `pattern`, `format`, `errorMessage`, `exists` and so on.
 
 Please refer to the [Nextflow schema specification](../nextflow_schema/nextflow_schema_specification.md) docs for details.