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Nextstrain

Real-time tracking of pathogen evolution

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https://nextstrain.org
@nextstrain
@[email protected]

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ncov ncov Public

Nextstrain build for novel coronavirus SARS-CoV-2

Python 1.4k 404
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 267 128
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 290 159

Repositories

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Showing 10 of 85 repositories

nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 28 21 4 12 Updated Jun 30, 2024
dengue Public
Nextstrain build for dengue virus

nextstrain/dengue’s past year of commit activity

Python 8 11 8 0 Updated Jun 29, 2024
measles Public
Nextstrain build for measles virus

nextstrain/measles’s past year of commit activity

Python 0 6 6 2 Updated Jun 29, 2024
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 267 AGPL-3.0 128 211 (1 issue needs help) 54 Updated Jun 28, 2024
seasonal-cov Public

nextstrain/seasonal-cov’s past year of commit activity

Python 1 0 4 1 Updated Jun 28, 2024
nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org’s past year of commit activity

JavaScript 87 AGPL-3.0 49 71 (1 issue needs help) 8 Updated Jun 28, 2024
nextclade Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextstrain/nextclade’s past year of commit activity

Rust 202 MIT 58 99 (29 issues need help) 17 Updated Jun 28, 2024
auspice Public
Web app for visualizing pathogen evolution

nextstrain/auspice’s past year of commit activity

JavaScript 290 AGPL-3.0 159 208 (4 issues need help) 46 Updated Jun 28, 2024
avian-flu Public
Nextstrain build for avian influenza viruses

nextstrain/avian-flu’s past year of commit activity

Python 13 6 3 2 Updated Jun 27, 2024
fauna Public
RethinkDB database to support real-time virus analysis

nextstrain/fauna’s past year of commit activity

Python 33 AGPL-3.0 13 17 9 Updated Jun 27, 2024

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Python JavaScript Shell C TypeScript

Most used topics

nextstrain pathogen sars-cov-2 clades ncov

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