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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 269 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 163

Repositories

Showing 10 of 94 repositories
  • forecasts-ncov Public

    SARS-CoV-2 variant growth rates and frequency forecasts

    nextstrain/forecasts-ncov’s past year of commit activity
    Python 7 2 11 6 Updated Jan 17, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 3 0 7 1 Updated Jan 17, 2025
  • forecasts-viz Public
    nextstrain/forecasts-viz’s past year of commit activity
    JavaScript 1 0 2 1 Updated Jan 17, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 269 AGPL-3.0 128 223 (1 issue needs help) 36 Updated Jan 17, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 20 12 Updated Jan 17, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 163 231 (4 issues need help) 31 Updated Jan 16, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 93 AGPL-3.0 49 68 13 Updated Jan 16, 2025
  • auspice.us Public
    nextstrain/auspice.us’s past year of commit activity
    JavaScript 13 8 6 2 Updated Jan 16, 2025
  • cli Public

    The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

    nextstrain/cli’s past year of commit activity
    Python 27 MIT 20 61 3 Updated Jan 16, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 46 27 23 1 Updated Jan 15, 2025
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