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unselected RNA-seq based workflow #334

Merged
merged 49 commits into from
Jul 17, 2024
Merged

unselected RNA-seq based workflow #334

merged 49 commits into from
Jul 17, 2024

Commits on Mar 21, 2024

  1. first steps & sc run

    mapo9 committed Mar 21, 2024
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Commits on Mar 25, 2024

  1. input change

    mapo9 committed Mar 25, 2024
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Commits on Apr 10, 2024

  1. stage before pull

    mapo9 committed Apr 10, 2024
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Commits on Apr 11, 2024

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  2. barcode airr test

    mapo9 committed Apr 11, 2024
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Commits on Apr 23, 2024

  1. Merge pull request nf-core#325 from nf-core/dev

    Release 4.0
    ggabernet authored Apr 23, 2024
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Commits on May 6, 2024

  1. dev update

    mapo9 committed May 6, 2024
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Commits on May 7, 2024

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Commits on May 8, 2024

  1. linting

    mapo9 committed May 8, 2024
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  2. fastp before trust4

    mapo9 committed May 8, 2024
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Commits on May 10, 2024

  1. fastp before trust4

    mapo9 committed May 10, 2024
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Commits on May 16, 2024

  1. bulk and sc rnaseq input

    mapo9 committed May 16, 2024
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  2. bulk rnaseq test workflow

    mapo9 committed May 16, 2024
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  3. sc rnaseq tests

    mapo9 committed May 16, 2024
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  4. docs

    mapo9 committed May 16, 2024
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  5. linting & prettier

    mapo9 committed May 16, 2024
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  6. trailing whitespace

    mapo9 committed May 16, 2024
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  7. trailing whitespace

    mapo9 committed May 16, 2024
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Commits on May 21, 2024

  1. bugfix

    mapo9 committed May 21, 2024
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  2. trailing whitespace

    mapo9 committed May 21, 2024
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  3. view statement removed

    mapo9 committed May 21, 2024
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Commits on May 23, 2024

  1. incorporating review comments

    mapo9 committed May 23, 2024
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  2. fix test

    mapo9 committed May 23, 2024
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  3. removed view statement

    mapo9 committed May 23, 2024
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Commits on May 28, 2024

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  2. generate reference fasta

    ggabernet committed May 28, 2024
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  4. generate trust4 reference

    ggabernet committed May 28, 2024
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Commits on May 29, 2024

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Commits on May 30, 2024

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  2. test the dev container

    ggabernet committed May 30, 2024
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  3. update container

    ggabernet committed May 30, 2024
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  4. update changelog

    ggabernet committed May 30, 2024
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  5. improve protocol logs

    ggabernet committed May 30, 2024
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  6. presto wasnt updated

    ggabernet committed May 30, 2024
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  7. fix linting

    ggabernet committed May 30, 2024
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  8. rm irrelevant param

    ggabernet committed May 30, 2024
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Commits on May 31, 2024

  1. merge dev

    ggabernet committed May 31, 2024
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Commits on Jun 3, 2024

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Commits on Jun 5, 2024

  1. trust4 nf-core module

    mapo9 committed Jun 5, 2024
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Commits on Jul 17, 2024

  1. improve docs

    ggabernet committed Jul 17, 2024
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  3. fix prettier

    ggabernet committed Jul 17, 2024
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  5. fix issue with merge_UMI

    ggabernet committed Jul 17, 2024
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